Table 6.
Prediction accuracies obtained by SVR with different input vectors
Window size | Profile | Conservation index | PSSM (the YU method) |
C – 11 | |||
11 | 70.87 | 73.68 | 70.08 |
13 | 71.16 | 73.65 | 69.47 |
15 | 71.51 | 74.16 | 71.06 |
17 | 71.19 | 74.16 | 68.23 |
19 | 70.91 | 74.41 | 61.85 |
21 | 70.84 | 74.19 | 59.46 |
C – 2 | |||
11 | 70.55 | 73.17 | 69.85 |
13 | 70.94 | 73.26 | 69.31 |
15 | 71.16 | 74.31 | 70.52 |
17 | 71.64 | 73.61 | 67.11 |
19 | 70.68 | 73.90 | 61.54 |
21 | 70.49 | 74.09 | 59.31 |
C – 5 | |||
11 | 70.36 | 72.37 | 69.79 |
13 | 71.19 | 72.53 | 69.12 |
15 | 70.91 | 73.36 | 70.43 |
17 | 71.32 | 72.72 | 66.92 |
19 | 70.46 | 73.07 | 61.60 |
21 | 70.59 | 72.85 | 59.18 |
C – 7 | |||
11 | 70.81 | 72.05 | 70.17 |
13 | 71.03 | 72.15 | 69.15 |
15 | 71.13 | 72.94 | 70.43 |
17 | 71.19 | 72.37 | 66.89 |
19 | 70.43 | 72.50 | 61.63 |
21 | 70.52 | 72.08 | 59.18 |
1Regularization constant C was set to 1.