Table 2.
Base occurrences at different positions of flanking repeats and of the 3′ adjacent regions
N |
Alu
|
ID
|
||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
P | T | C | A | G | Total | P | T | C | A | G | Total | |
−20 | A | 0 | 0 | 6 | 1 | 7 | A | 0 | 0 | 4 | 0 | 4 |
−19 | A | 0 | 0 | 11 | 0 | 11 | A | 0 | 0 | 3 | 1 | 4 |
−18 | A | 2 | 1 | 20 | 3 | 26 | A | 0 | 0 | 6 | 0 | 6 |
−17 | A | 4 | 0 | 36 | 7 | 47 | A | 0 | 0 | 9 | 0 | 9 |
−16 | A | 8 | 0 | 82 | 17 | 107 | A | 0 | 1 | 13 | 2 | 16 |
−15 | A | 8 | 2 | 127 | 22 | 159 | A | 1 | 0 | 26 | 4 | 31 |
−14 | A | 10 | 1 | 164 | 28 | 203 | A | 2 | 0 | 35 | 5 | 42 |
−13 | A | 24 | 2 | 186 | 36 | 248 | A | 2 | 0 | 34 | 12 | 48 |
−12 | A | 45 | 10 | 190 | 38 | 283 | A | 4 | 0 | 42 | 4 | 50 |
−11 | A | 66 | 20 | 173 | 52 | 311 | A | 8 | 3 | 32 | 9 | 52 |
−10 | A | 79 | 42 | 162 | 61 | 344 | A | 12 | 9 | 20 | 15 | 56 |
−9 | A | 72 | 60 | 137 | 75 | 344 | A | 12 | 12 | 21 | 11 | 56 |
−8 | A | 80 | 58 | 118 | 88 | 344 | A | 12 | 6 | 22 | 16 | 56 |
−7 | A | 79 | 72 | 135 | 58 | 344 | A | 12 | 5 | 28 | 11 | 56 |
−6 | A | 87 | 40 | 146 | 71 | 344 | A | 16 | 9 | 21 | 10 | 56 |
−5 | A | 92 | 61 | 124 | 67 | 344 | A | 14 | 11 | 16 | 15 | 56 |
−4 | T | 137 | 43 | 119 | 45 | 344 | T | 26 | 8 | 14 | 8 | 56 |
−3 | T | 118 | 72 | 96 | 58 | 344 | C | 14 | 17 | 11 | 14 | 56 |
−2 | T | 137 | 90 | 49 | 68 | 344 | T | 21 | 16 | 9 | 10 | 56 |
−1 | A | 85 | 46 | 149 | 64 | 344 | A | 19 | 7 | 21 | 9 | 56 |
Comp., % (top) | 23.4 | 12.8 | 46.1 | 17.8 | 21.0 | 12.5 | 47.7 | 18.9 | ||||
Comp., % (bot.) | 14.3 | 7.8 | 28.2 | 10.9 | 27.4 | 18.4 | 28.6 | 25.7 | ||||
1 | A | 48 | 30 | 169 | 94 | 341 | A | 9 | 5 | 21 | 21 | 56 |
2 | A | 92 | 53 | 149 | 47 | 341 | A | 14 | 14 | 21 | 7 | 56 |
3 | A | 83 | 68 | 104 | 84 | 339 | G | 14 | 14 | 13 | 15 | 56 |
4 | A | 98 | 52 | 115 | 71 | 336 | T | 20 | 8 | 14 | 14 | 56 |
5 | A | 101 | 50 | 109 | 73 | 333 | A | 13 | 12 | 18 | 13 | 56 |
6 | T | 116 | 69 | 81 | 66 | 332 | G | 15 | 8 | 15 | 18 | 56 |
7 | A | 94 | 56 | 120 | 62 | 332 | G | 15 | 10 | 12 | 18 | 55 |
8 | A | 91 | 79 | 100 | 61 | 331 | A | 16 | 8 | 17 | 14 | 55 |
9 | A | 66 | 80 | 102 | 83 | 331 | T | 21 | 6 | 17 | 11 | 55 |
10 | A | 91 | 70 | 116 | 54 | 331 | A | 11 | 14 | 15 | 15 | 55 |
11 | A | 91 | 71 | 99 | 70 | 331 | T | 19 | 14 | 10 | 11 | 54 |
12 | T | 99 | 67 | 99 | 66 | 331 | T | 16 | 14 | 10 | 14 | 54 |
13 | T | 104 | 60 | 101 | 65 | 330 | A | 15 | 8 | 18 | 13 | 54 |
14 | A | 84 | 71 | 97 | 77 | 329 | T | 16 | 6 | 16 | 16 | 54 |
15 | A | 86 | 61 | 111 | 71 | 329 | A | 12 | 11 | 19 | 12 | 54 |
All 3′ ends of the flanking repeats correspond to position −1. Regions 3′ adjacent to the flanking repeats start at position 1 and are indicated by positive numbers (column 1). Columns 2–13 and the base compositions in the middle of the table are analogous to those in table 1.