Table 1.
Transcription factors and their binding site motifs
| TF Familya | Binding siteb | CI thresholdc | Accessiond | Namee | Reff |
| C2C2-DOF | WAAAG | 9.8 | At3g50410 | OBP1 | [55] |
| At5g60850 | OBP4 | ||||
| At1g26790 | - | ||||
| At1g69570 | DOF1.1 | ||||
| At5g39660 | DOF5.2 | ||||
| At3g47500 | DOF3.3 | ||||
| WRKY | TTTGACY | 0.7 | At4g01250 | WRKY22 | [49] |
| At2g38470 | WRKY33 | ||||
| At1g80840 | WRKY40 | ||||
| At2g46400 | WRKY46 | ||||
| At4g23810 | WRKY53 | ||||
| At4g24240 | WRKY7 | ||||
| At3g56400 | WRKY70 | ||||
| MYB | AAMAATCT | 0.3 | At2g46830 | CCA1 | [56] |
| AP2/EREBP | AGCCGCC | 10-2 | At4g17500 | ERF1 | [57] |
| At5g47230 | ERF5 | ||||
| BZIP | CACGTGG (or) TGACGTGG (or) ATGACGTCAT | At1g49720 | ABRE | ||
| 10-2 | At3g17609 | - | |||
| 10-2 | At2g31370 | BZIP59 | [58] | ||
| 10-3 | At4g01120 | GBF2 | [59] | ||
| At2g46270 | BZIP55 | ||||
| At4g34590 | ATB2 | ||||
| BHLH | CANNTG | 6.8 | At3g05800 | - | [60] |
| NAC | CATGTG | 0.5 | At1g01720 | ATAF1 | [48] |
| At3g49530 | - | ||||
| At4g27410 | RD26 | ||||
| MADS | CCWWWWWWGG | 0.1 | At2g45660 | AGL20 | [61] |
| AP2 | CCGAC | 0.5 | At4g25480 | CBF3 | [62] |
| At4g25470 | CBF1 | ||||
| TCP2 | GTGGNCCC | 0.2 | At4g18390 | - | [63] |
| HSF | NGAANNTTCN (or) NTTCNNGAAN | 0.8 | At3g24520 | - | [64] |
| 0.7 | At4g18880 | HSF21 | |||
| At1g67970 | HSF5 |
Transcription factors selected for further analysis. a: Transcription factor family. b: Binding site or motif to which the TF binds, where 'W' = 'A'/'T'; 'M' = 'A'/'C'; 'Y' = 'C'/'T'; 'N' = 'A'/'T'/'G'/'C'. c: Minimum number of copies required to be found within 1 kb upstream of a gene in order for the motif to be considered as over-represented according to the confidence interval threshold. d:Locus ID of the gene. e: Common name of the TF. e: Literature reference.