. 2007 Sep 2;8:304. doi: 10.1186/1471-2164-8-304

Table 2.

Motif synergy groups from up-regulated genes

Transcription Factor(s)^a	EC score^b	Threshold EC score^c	No. of genes^d
WRKY	0.22	0.18	9
TCP2	1	0.16	3
NAC, WRKY, DOF	0.27	0.2	6
NAC, HSF, WRKY	0.22	0.17	10
NAC, HSF, DOF	0.23	0.22	20
NAC, AP2(CBF), WRKY, DOF	0.25	0.17	8
NAC, AP2(CBF), WRKY	0.27	0.2	6
NAC, AP2(CBF), HSF, WRKY	0.24	0.17	13
NAC, AP2(CBF), HSF, DOF	0.18	0.17	11
NAC, AP2(CBF), HSF	0.26	0.18	25
MYB, NAC	0.56	0.17	10
MYB, MADS	1	0.16	3
MYB, DOF	0.52	0.21	34
MYB, BZIP, DOF	0.33	0.16	3
MYB, BZIP, BHLH, NAC, DOF	0.33	0.16	3
MYB, BZIP	1	0.17	4
MYB, BHLH, NAC, DOF	0.47	0.2	6
MYB, BHLH, NAC	0.36	0.17	11
MYB, BHLH, MADS	1	0.16	3
MYB, BHLH, DOF	0.33	0.18	14
MYB, BHLH	0.69	0.17	10
MYB	0.59	0.2	19
MADS, DOF	0.8	0.2	5
MADS	1	0.17	8
HSF, WRKY, DOF	0.36	0.17	8
HSF, WRKY	0.22	0.18	9
HSF	0.21	0.2	28
DOF	0.23	0.19	122
BZIP, WRKY, DOF	0.33	0.17	4
BZIP, NAC, HSF	0.33	0.16	3
BZIP, NAC, AP2(CBF), HSF, WRKY, DOF	0.33	0.16	3
BZIP, NAC, AP2(CBF), HSF	0.33	0.16	3
BZIP, NAC, AP2(CBF), DOF	0.4	0.2	5
BZIP, NAC, AP2(CBF)	0.67	0.16	3
BZIP, DOF	0.22	0.18	9
BZIP, BHLH, NAC, DOF	0.67	0.16	3
BZIP, BHLH	0.44	0.18	9
BZIP	0.52	0.21	33
BHLH, NAC, DOF	0.27	0.22	21
BHLH, NAC	0.38	0.2	19
BHLH, MADS, DOF	1	0.16	3
BHLH, DOF	0.49	0.21	34
BHLH	0.45	0.21	35
AP2(CBF), HSF, DOF	0.19	0.18	16
AP2(CBF), HSF	0.23	0.2	32
AP2(CBF), DOF	0.27	0.17	11
AP2(CBF)	0.27	0.2	6
AP2(AtERF), HSF, WRKY	0.33	0.16	3
AP2(AtERF), DOF	0.5	0.17	4

Results obtained by applying the method using the confidence interval criterion on the genes filtered from the 24 k gene array data set. a: TF families. b: EC score obtained from the cluster of putative target genes predicted by this method. c: Threshold above which the EC score is acceptable. d: Number of putative target genes that are regulated by the TF families that are indicated in the first column.