TABLE 1.
Actinomycete 16S rDNA sequences identified in a deep-sea sediment core in three clone libraries
| Representative clone (accession no.) | No. of clones in library
|
Closest relative
|
||||
|---|---|---|---|---|---|---|
| 5-12 cm | 15-18 cm | 43-46 cm | Actinomycete | Accession no. | % Identity | |
| T01 (AF544299) | 1 | Verrucosispora sp. strain IM-6907 | AF131631 | 97 | ||
| T02 (AF544256) | 1 | Streptomyces thermocarboxydovorans | U94489 | 98 | ||
| T03 (AF544259) | 1 | Streptomyces thermocarboxydovorans | U94489 | 95 | ||
| T04 (AF544298) | 1 | Streptomyces sp. strain KACC 20159 | AF345862 | 89 | ||
| T05 (AF544297) | 1 | Uncultured actinobacterium clone ASb07 | AY124393 | 96 | ||
| T06 (AF544294) | 1 | Streptomyces sp. strain 19504 | AJ315072 | 92 | ||
| T07 (AF544296) | 1 | Streptomyces capensis | AF452714 | 97 | ||
| T08 (AF544295) | 1 | Dietzia maris | Y18883 | 94 | ||
| T09 (AF544279) | 1 | Uncultured actinobacterium clone SDe09 | AY124457 | 92 | ||
| T10 (AF544293) | 1 | Corynebacterium ulcerans | X84256 | 96 | ||
| T11 (AF544254) | 1 | Streptomyces sp. strain IM-6899 | AF131529 | 95 | ||
| T12 (AF544255) | 1 | Streptomyces sp. strain IM-6960 | AF131527 | 95 | ||
| T13 (AF544292) | 1 | Kineococcus-like bacterium AS2978 | AF060676 | 95 | ||
| T14 (AF544291) | 1 | Rhodococcus sp. strain ARG-BN062 | AF420423 | 95 | ||
| T15 (AF544290) | 1 | Frankia sp. strain | AF063642 | 93 | ||
| T16 (AF544257) | 1 | Dietzia maris | Y18883 | 95 | ||
| T17 (AF544298) | 1 | Mycobacterium sp. strain | U46146 | 97 | ||
| T19 (AF544258) | 1 | Streptomyces sp. strain IM-1436 | AF131505 | 96 | ||
| T21 (AF544288) | 1 | Geodermatophilus sp. strain BC509 | AJ296063 | 96 | ||
| T22 (AF544260) | 1 | Streptomyces sp. strain IM-1436 | AF131505 | 97 | ||
| T23 (AF544287) | 1 | Streptomyces thermocarboxydovorans | U94489 | 99 | ||
| T24 (AF544286) | 1 | Corynebacterium tuberculostearicum | AF510731 | 98 | ||
| T26 (AF544285) | 1 | Streptomyces sp. strain IM-1436 | AF131505 | 96 | ||
| T27 (AF544261) | 1 | Streptomyces sp. strain IM-7585 | AF131604 | 96 | ||
| T28 (AF544284) | 1 | Amycolatopsis sp. strain GY109 | AF466094 | 96 | ||
| T29 (AF544262) | 1 | Uncultured bacterium ARFS-3 | AJ277836 | 98 | ||
| T30 (AF544263) | 1 | Tsukamurella inchonensis | AF283281 | 93 | ||
| T31 (AF544283) | 1 | Micromonospora sp. strain IM-7020 | AF131416 | 95 | ||
| T32 (AF544264) | 1 | Streptomyces sp. strain NK1057 | AF492844 | 98 | ||
| T33 (AF544282) | 3 | 1 | Uncultured actinobacterium clone ASb07 | AY124393 | 99 | |
| T34 (AF544265) | 1 | Dietzia maris | Y18883 | 94 | ||
| T35 (AF544281) | 1 | Blastococcus sp. strain BC448 | AJ316571 | 98 | ||
| T36 (AF544266) | 1 | Streptomyces sp. strain IM-8073 | AF131609 | 97 | ||
| T37 (AF544280) | 1 | Streptomyces sp. strain 11AG8 | AF233375 | 95 | ||
| T38 (AF544267) | 1 | Streptomyces capensis | AF452714 | 98 | ||
| T40 (AF544268) | 1 | Blastococcus sp. strain BC448 | AJ316571 | 97 | ||
| T41 (AF544269) | 1 | 2 | Dietzia maris | Y18883 | 94 | |
| T42 (AF544300) | 1 | Streptomyces pallidus | AJ399492 | 94 | ||
| T43 (AF544270) | 1 | Rhodococcus tukisamuensis | AB067734 | 95 | ||
| T44 (AF544301) | 1 | Amycolatopsis sp. strain GY109 | AF466094 | 96 | ||
| T45 (AF544271) | 1 | Streptomyces sp. strain IM-8073 | AF131609 | 95 | ||
| T47 (AF544272) | 2 | Streptomyces thermocarboxydovorans | U94489 | 99 | ||
| T48 (AF544302) | 1 | Mycobacterium sp. strain STR-12 | AF236839 | 96 | ||
| T49 (AF544273) | 1 | Streptomyces somaliensis | AJ007403 | 95 | ||
| T50 (AF544274) | 1 | Uncultured actinobacterium clone SDb12 | AY124440 | 91 | ||
| T51 (AF544303) | 1 | Streptomyces sp. strain IM-7585 | AF131604 | 95 | ||
| T52 (AF544275) | 1 | Streptomyces somaliensis | AJ007401 | 90 | ||
| T54 (AF544304) | 1 | Geodermatophilus sp. strain | X92358 | 96 | ||
| T56 (AF544276) | 1 | Geodermatophilus sp. strain IM-1092 | AF131367 | 93 | ||
| T57 (AF544305) | 1 | Streptomyces thermocarboxydovorans | U94489 | 99 | ||
| T58 (AF544277) | 1 | Mycobacterium sp. strain STR-18 | AF236841 | 95 | ||
| T59 (AF544306) | 1 | Rhodococcus opacus | Y11892 | 92 | ||
| T60 (AF544278) | 1 | Streptomyces thermocarboxydovorans | U94489 | 98 | ||
| M03 (AF544336) | 1 | Corynebacterium appendicis | AJ314919 | 99 | ||
| M06 (AF544335) | 2 | Rhodococcus sp. strain SRB1948-Z40 | AB010913 | 96 | ||
| M07 (AF544334) | 1 | Corynebacterium striatum | X81910 | 94 | ||
| M08 (AF544308) | 1 | Rhodococcus ruber | X80625 | 95 | ||
| M09 (AF544333) | 1 | Rhodococcus fascians | X79186 | 95 | ||
| M11 (AF544307) | 1 | Pseudonocardia aurantiaca | AF325727 | 96 | ||
| M12 (AF544332) | 1 | Dietzia maris | Y18883 | 95 | ||
| M14 (AF544322) | 1 | Rhodococcus fascians | X79186 | 98 | ||
| M15 (AF544331) | 1 | Rhodococcus koreensis | AF124342 | 96 | ||
| M16 (AF544321) | 1 | Streptomyces sp. strain CN732 | AF101415 | 92 | ||
| M17 (AF544330) | 1 | Pseudonocardia alaniniphila | AF325726 | 98 | ||
| M20 (AF544320) | 1 | Nocardioides sp. strain V4.BO.15 | AJ244655 | 93 | ||
| M22 (AF544319) | 1 | Rhodococcus fascians | X79186 | 95/PICK> | ||
| M23 (AF544329) | 1 | Turicella otitidis | X73976 | 99 | ||
| M24 (AF544318) | 1 | Rhodococcus fascians | X79186 | 98 | ||
| M25 (AF544328) | 1 | Rhodococcus fascians | X79186 | 97 | ||
| M26 (AF544317) | 1 | Mycobacterium manitobense | AY082001 | 94 | ||
| M27 (AF544327) | 1 | Rhodococcus fascians | X79186 | 97 | ||
| M28 (AF544316) | 1 | Turicella otitidis | X73976 | 92 | ||
| M29 (AF544326) | 1 | Actinosynnema sp. strain IM-1402 | AF131351 | 95 | ||
| M30 (AF544315) | 1 | Rhodococcus fascians | X79186 | 97 | ||
| M33 (AF544325) | 1 | Rhodococcus fascians | X79186 | 96 | ||
| M35 (AF544324) | 1 | Rhodococcus zopfii | AF191343 | 93 | ||
| M36 (AF544314) | 1 | Uncultured actinobacterium clone ASb09 | AY124394 | 94 | ||
| M37 (AF544323) | 1 | Rhodococcus fascians | X79186 | 97 | ||
| M38 (AF544337) | 1 | Mycobacterium manitobense | AY082001 | 96 | ||
| M39 (AF544313) | 1 | Frigoribacterium sp. strain 301 | AF157479 | 96 | ||
| M40 (AF544312) | 1 | Rhodococcus fascians | X79186 | 95 | ||
| M41 (AF544338) | 2 | Rhodococcus sp. strain UFZ-B520 | AF235011 | 98 | ||
| M43 (AF544311) | 1 | Rhodococcus fascians | X79186 | 98 | ||
| M44 (AF544339) | 1 | Rhodococcus fascians | X79186 | 98 | ||
| M45 (AF544310) | 1 | Rhodococcus fascians | X79186 | 98 | ||
| M46 (AF544340) | 1 | Mycobacterium manitobense | AY082001 | 96 | ||
| M47 (AF544309) | 1 | Rhodococcus fascians | X79186 | 97 | ||
| D02 (AF544341) | 1 | Rhodococcus fascians | X79186 | 97 | ||
| D05 (AF544342) | 1 | 1 | Mycobacterium manitobense | AY082001 | 98 | |
| D06 (AF544343) | 1 | Kitasatospora sp. strain IM-6832 | AF131378 | 96 | ||
| D11 (AF544344) | 1 | Rhodococcus fascians | X79186 | 98 | ||
| D13 (AF544345) | 1 | Rhodococcus fascians | X79186 | 99 | ||
| D16 (AF544346) | 2 | Rhodococcus sp. strain S9 | AF260713 | 98 | ||
| D17 (AF544347) | 1 | Rhodococcus fascians | X79186 | 97 | ||
| D22 (AF544348) | 1 | Rhodococcus fascians | X79186 | 96 | ||
| D25 (AF544349) | 1 | Arthrobacter sp. strain “SMCC G960” | AF197025 | 96 | ||
| D26 (AF544350) | 1 | Rhodococcus fascians | X79186 | 98 | ||
| D27 (AF544351) | 1 | Mycobacterium sp. strain STR-21 | AF236837 | 96 | ||
| D32 (AF544352) | 1 | Rhodococcus fascians | X79186 | 99 | ||
| D35 (AF344353) | 1 | Uncultured actinobacterium clone ASc02 | AY124397 | 95 | ||
| D36 (AF544354) | 1 | Rhodococcus sp. strain YK2 | AB070458 | 96 | ||
| D41 (AF544355) | 1 | Rhodococcus fascians | X79186 | 98 | ||
| D42 (AF544356) | 1 | Mycobacterium sp. strain STR-11 | AF236838 | 97 | ||
| D43 (AF544357) | 1 | Dietzia maris | Y18883 | 95 | ||
| D44 (AF544358) | 2 | Rhodococcus fascians | AF205371 | 98 | ||
| D45 (AF544359) | 1 | Rhodococcus fascians | X79186 | 98 | ||
| D47 (AF544360) | 1 | Dietzia maris | Y18883 | 94 | ||
| D48 (AF544361) | 1 | Rhodococcus fascians | X79186 | 99 | ||
| D50 (AF544362) | 1 | Rhodococcus fascians | X79186 | 97 | ||
| D52 (AF544363) | 1 | Blastococcus sp. strain BC412 | AJ316574 | 98 | ||
| D54 (AF544364) | 1 | Rhodococcus fascians | X79186 | 98 | ||
| D55 (AF544365) | 1 | Rhodococcus fascians | X79186 | 96 | ||
| D57 (AF544366) | 11 | 31 | Rhodococcus fascians | X79186 | 100 | |
| D58 (AF544367) | 1 | Mycobacterium manitobense | AY082001 | 96 | ||
| D61 (AF544368) | 1 | Dietzia maris | Y18883 | 95 | ||
| D62 (AF544369) | 1 | Rhodococcus fascians | X79186 | 97 | ||