TABLE 3.
Primers and fluorescently labeled probes that were used in the TaqMan assay of the eight SNP polymorphisms assessed in the LpHD1 locus
| SNP | Forward and reverse primers (5′–3′) | TaqMan probe |
|---|---|---|
| 320 | ACCACATCTCCTGGTCAGAGTTG | AGGCC[C/T]TCGCCCT |
| ACCTTCGATAACGCTTATTTGCA | ||
| 513 | ATGTCATCTCGAAGTCAC | CCCG[G/A]TGCGCCA |
| ATTAAGGATCCCACACGA | ||
| 1475 | ATCTCCGTCCGGACCACAT | TTCCACA[T/A]TCGGGC |
| GAACCTGAGCCTGGAGCACTA | ||
| 2118 | GCCTCATATGTTCCTTTGTTAGATCA | TGAACA[C]GTGAAATT |
| GATGGATGCATCTGTGTTAACACTT | CCATGAACA[T]GTGAAAT | |
| 2389 | ATCTGGAAAGGAAAGAGACATGAGG | AGACAGCTA[C]AGTACAA |
| TGCACCATATCCTCCTTGGC | CAGACAGCTA[T]AGTACAAG | |
| 4443 | GACACTCTACTATTAGTACCCTGCACTGA | ACTGCCAA[C]ATAGC |
| CTGCATATGTGAGTGTGGAGGAA | ACTGCCAA[A]ATAG | |
| 4717 | CAGGCTGTGTGATGGATGTTG | TGCCAAGC[G/A]TGGTGT |
| ATCACAAGACGCGCAGAGGTAT | ||
| 5443 | CAACAACAGCGTGAGTTCATCTATT | CATGCTATAATTT[G]GTTAAT |
| GGTCTTTCAAATGAAGTAGCATTAACTC | TCATGCTATAATTT[T]GTTAAT |