Table 1.
SNP Name | Assoc Allele | Location (Build 35) | MAF in cases | MAF in controls | P value | SNP call rate(%) |
---|---|---|---|---|---|---|
rs3088307 | C | 191537657 | 0.92 | 0.91 | 0.4452 | 89.5 |
rs16824035 | C | 191545879 | 0.92 | 0.91 | 0.4246 | 98.2 |
rs6718902 | T | 191546449 | 0.52 | 0.52 | 0.7731 | 97.8 |
rs13395505 | G | 191546759 | 0.39 | 0.39 | 0.8549 | 99.4 |
rs1547550 | C | 191553970 | 0.92 | 0.91 | 0.1849 | 89.3 |
rs2280234 | A | 191558344 | 0.83 | 0.82 | 0.721 | 90.4 |
rs2280233 | C | 191558811 | 0.12 | 0.12 | 0.8711 | 98 |
rs2280232 | G | 191559011 | 0.17 | 0.17 | 0.7421 | 90.8 |
rs11887698 | A | 191563119 | 0.74 | 0.73 | 0.4329 | 90.8 |
rs10199181 | A | 191581798 | 0.28 | 0.28 | 0.8878 | 99.3 |
rs13029532 | C | 191584146 | 0.13 | 0.13 | 0.9841 | 99.4 |
rs10208033 | C | 191587662 | 0.74 | 0.73 | 0.4587 | 84.4 |
rs1467199 | G | 191588747 | 0.51 | 0.49 | 0.2539 | 98.7 |
rs16833177 | C | 191595877 | 0.45 | 0.43 | 0.1504 | 99.4 |
rs4853456 | A | 191600008 | 0.81 | 0.8 | 0.4204 | 91.2 |
rs3024904 | A | 191603447 | 0.81 | 0.8 | 0.5432 | 98.3 |
rs3024936 | C | 191603621 | 0.94 | 0.93 | 0.2285 | 91.5 |
rs925847 | T | 191605785 | 0.54 | 0.51 | 0.1183 | 99.5 |
rs6749371 | A | 191610429 | 0.88 | 0.87 | 0.5736 | 99.5 |
rs6715106 | A | 191621279 | 0.88 | 0.87 | 0.5935 | 99.2 |
rs16833215 | G | 191622044 | 0.48 | 0.45 | 0.0406 | 98 |
rs3024866 | C | 191631086 | 0.52 | 0.48 | 0.0229 | 97.8 |
rs1517352 | A | 191639709 | 0.51 | 0.47 | 0.0148 | 98 |
rs13017460 | A | 191640801 | 0.51 | 0.48 | 0.0124 | 98.9 |
rs7601754 | A | 191648696 | 0.84 | 0.82 | 0.0715 | 86 |
rs11889341a | T | 191651987 | 0.35 | 0.3 | 0.0003 | 99.4 |
rs6434435 | G | 191662109 | 0.86 | 0.85 | 0.1702 | 98 |
rs7574865a | T | 191672878 | 0.39 | 0.33 | 0.0004 | 91.1 |
rs8179673a | C | 191677586 | 0.39 | 0.34 | 0.002 | 99.2 |
rs10181656a | G | 191678124 | 0.39 | 0.34 | 0.0029 | 99.4 |
rs13401064 | C | 191678575 | 0.89 | 0.89 | 0.9341 | 97.4 |
rs16833260 | G | 191679810 | 0.54 | 0.49 | 0.0051 | 90.5 |
rs6752770 | G | 191681808 | 0.22 | 0.2 | 0.1662 | 97.1 |
rs4341966 | G | 191690450 | 0.78 | 0.77 | 0.2879 | 90.5 |
rs2356350 | G | 191710783 | 0.47 | 0.46 | 0.5645 | 99.3 |
rs11685878 | C | 191717700 | 0.59 | 0.58 | 0.2676 | 97.9 |
rs4853546 | G | 191717897 | 0.7 | 0.7 | 0.9996 | 98 |
rs1031509 | A | 191718434 | 0.31 | 0.3 | 0.9336 | 90.3 |
rs12327969 | C | 191719016 | 0.31 | 0.3 | 0.66 | 90.8 |
rs10497711 | G | 191722166 | 0.13 | 0.12 | 0.4322 | 98.9 |
rs7572482 | A | 191723317 | 0.46 | 0.46 | 0.9282 | 99.2 |
rs2278940 | A | 191724173 | 0.13 | 0.12 | 0.3094 | 98.2 |
rs897200 | A | 191726016 | 0.46 | 0.46 | 0.8733 | 90.4 |
rs16833437 | T | 191727617 | 0.46 | 0.46 | 0.8786 | 90 |
rs1031507 | T | 191728863 | 0.46 | 0.46 | 0.785 | 91 |
rs13001658 | G | 191733149 | 0.67 | 0.66 | 0.6955 | 89.2 |
rs1869624 | A | 191738636 | 0.13 | 0.12 | 0.2238 | 98.8 |
rs4853550 | T | 191739472 | 0.52 | 0.52 | 0.7674 | 98 |
rs4853551 | T | 191739508 | 0.12 | 0.11 | 0.7171 | 99.4 |
rs12467660 | A | 191739895 | 0.28 | 0.27 | 0.442 | 98 |
rs2054090 | A | 191741945 | 0.33 | 0.33 | 0.8721 | 99.1 |
rs7595886 | T | 191746983 | 0.28 | 0.26 | 0.307 | 91 |
Indicates the most significant SNPs with less than P value 0.005.