Table 2.
ATCV-1 putative ORFs grouped by their functional categories
| DNA replication, recombination and repair | ||
|---|---|---|
| Description | ORF | AAa |
| δ DNA polymerase | Z798L | 903 |
| Archaeo-eukaryotic primase | Z054L | 425 |
| PCNA | Z788R | 293 |
| Z530L | 262 | |
| Replication factor C | Z453R | 378 |
| RNase H | Z356L | 167 |
| Helicase-Superfamily III | Z066R | 599 |
| DNA Topoisomerase II | Z551L | 1059 |
| ATP-dependent DNA ligase | Z187L | 301 |
| ATPase (PP-loop) | Z728L | 505 |
| ATPase (DNA packaging) | Z437R | 249 |
| Pyrimidine dimer-specific glycosylase | Z313R | 123 |
| Exonuclease | Z622R | 277 |
| Integration and tranposition | ||
| Description | ORF | AA |
| Tlr 6Fp DNA mobile protein | Z016R | 111 |
| GIY-YIG endonuclease | Z271R | 345 |
| Z311R | 247 | |
| Z378L | 300 | |
| Z387R | 255 | |
| Z490R | 203 | |
| Z548L | 295 | |
| Z633L | 235 | |
| Z637L | 234 | |
| Z641L | 253 | |
| Z737R | 155 | |
| HNH endonuclease | Z225R | 346 |
| Z350L | 358 | |
| Z441L | 210 | |
| Z578L | 240 | |
| Z614L | 100 | |
| Z692L | 368 | |
| Z782L | 367 | |
| Protein synthesis, modification and degradation | ||
| Description | ORF | AA |
| Translation elongation factor-3 | Z679L | 994 |
| Prolyl-4-hydroxylase | Z750R | 230 |
| Thiol oxidoreductase | Z061R | 117 |
| Protein disulfide isomerase | Z081L | 107 |
| SKP-1 protein | Z339L | 149 |
| Ubiquitin | Z203L | 78 |
| Ring finger ubiquitin ligase | Z292L | 229 |
| Ubiquitin C-terminal hydrolase | Z717R | 280 |
| Zn metallopeptidase | Z477L | 201 |
| Lipid manipulation | ||
| Description | ORF | AA |
| N-acetyltransferase | Z147L | 196 |
| Glycerophosphoryl diesterase | Z077L | 227 |
| Lipoprotein lipase | Z362R | 231 |
| Lysophospholipase | Z396R | 276 |
| Patatin-like phospholipase | Z612R | 272 |
| Signaling | ||
| Description | ORF | AA |
| Aquaglyceroporin | Z300R | 271 |
| Potassium channel protein | Z585R | 83 |
| Potassium ion transporter | Z696R | 645 |
| Dual specificity phosphatase | Z219L | 192 |
| Serine/Threonine protein kinase | Z575R | 569 |
| Z576R | 310 | |
| Z605R | 295 | |
| Z609R | 281 | |
| Z708L | 579 | |
| Cell wall degradation | ||
| Description | ORF | AA |
| Chitinase | Z780L | 467 |
| Z814L | 596 | |
| Chitosanase | Z204R | 341 |
| β & α 1,4 linked glucuronic lyase | Z771L | 358 |
| β-1,3-glucanase | Z819L | 318 |
| α-L-arabinofuranosidase | Z832L | 480 |
| DNA restriction/modification | ||
| Description | ORF | AA |
| Cytosine methyltransferase | Z040R | 350 |
| Nucleotide metabolism | ||
| Description | ORF | AA |
| Ribo. Reductase (small subunit) | Z035L | 326 |
| Ribo. Reductase (large subunit) | Z101L | 764 |
| Ribonucleoside-triphosphate reductase | Z838L | 628 |
| Deoxynucleoside kinase | Z457L | 189 |
| dCMP deaminase | Z616L | 150 |
| dUTP pyrophosphatase | Z500L | 163 |
| Thymidylate synthase X | Z818L | 243 |
| Glutaredoxin | Z134L | 109 |
| Z143R | 85 | |
| Thioredoxin | Z413L | 113 |
| Z476L | 149 | |
| Sugar manipulation | ||
| Description | ORF | AA |
| D-lactate dehydrogenase | Z295L | 347 |
| dTDP-D-glucose 4,6 dehydratase | Z544R | 351 |
| Mannose-6-phosphate isomerase | Z752L | 121 |
| GDP-D-mannose dehydratase | Z804L | 353 |
| Fucose synthase | Z282L | 320 |
| UDP-glucose 6-dehydrogenase | Z571L | 404 |
| Cellulase precursor | Z832L | 480 |
| Glycosyltransferase | Z120R | 846 |
| Z178L | 533 | |
| Z417L | 553 | |
| Z425R | 612 | |
| Z667L | 546 | |
| Z823R | 554 | |
| Transcription | ||
| Description | ORF | AA |
| Transcription factor TFIIB | Z716R | 289 |
| Transcription factor TFIID | Z502R | 286 |
| Transcription factor TFIIS | Z740R | 222 |
| VLTF2-type transcription factor | Z289L | 219 |
| Superfamily II helicase | Z257L | 1258 |
| Z596R | 708 | |
| Z643L | 448 | |
| mRNA guanylyltransferase | Z233L | 239 |
| RNA triphosphatase | Z084R | 200 |
| Histone H3, Lys 27 methylase | Z574L | 116 |
| SWI/SNF chromatin remodeling complex | Z794L | 1271 |
| SWI/SNF helicase | Z849R | 457 |
| RNase III | Z063L | 269 |
| Cytosine deaminase | Z744R | 123 |
| Miscellaneous | ||
| Description | ORF | AA |
| Ornithine/Arginine decarboxylase | Z760R | 372 |
| Agmatine iminohydrolase | Z806R | 363 |
| N-carbamoylput. amidohydrolase | Z169R | 299 |
| Homospermidine synthase | Z590L | 514 |
| Histidine decarboxylase | Z421L | 357 |
| Monoamine oxidase | Z773L | 387 |
| Amidase | Z177L | 279 |
| Cu/Zn-superoxide dismutase | Z190L | 183 |
| Erthrocyte binding protein | Z092L | 607 |
| ABC transporter protein | Z086R | 460 |
| Mucin-desulfating sulfatase | Z734R | 347 |
| Fibronectin binding protein | Z119L | 109 |
a
This number includes the stop codon so the actual amino acid number is one less than that listed.