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. 2007 Aug 28;8:314. doi: 10.1186/1471-2105-8-314

Figure 3.

Figure 3

Flowcharts of evaluation of similarity detection. A. Reference-dependent, with no consideration of alignment quality. B. Reference-dependent, with the requirement of alignment quality for true positive hits. C. Reference-independent, global mode. D. Reference-independent, local mode.