Table 2.
Binding site | Sequence | HFH-4 Binding* |
---|---|---|
1. HFH-8 | ATGTGTTTGTTTA | +++ |
2. HNF-3 no. 4 | CAATGTTTGTTTA | +++ |
3. HFH-2 no. 7 | gTTTGTTGTTTTA | +++ |
4. HFH-2 no. 12 | TATTGTTaTTTTA | + |
5. HFH-4 no. 3 | gTTTGTTTacaat | ++ |
6. HNF-3 no. 4m1a | CAATaTTTGTTTA | − |
7. HNF-3 no. 4m2a | CAATaTTTaTTTA | − |
8. Ceruloplasmin | CAGaGTTTGTgTg | − |
9. TTF-1 | TcGcGTTTGTTTt | − |
HFH-4 Consensus: | HWDTGTTTGTTTA |
Isolation of HFH-2 and HNF-3 DNA binding sequences was previously (24). Nucleotides which deviate from the HFH-4 consensus or HFH-2 no. 7 sequence are indicated in lowercase letters. Nucleotide abbreviations are as follows: H is not G, W is A or T and D is not C. Ceruloplasmin, ceruloplasin −245/−233; TTF-1, thyroid transcription factor-1 −196/−208.
HFH-4 protein binding affinity is as follows: +++, high; ++, moderate; +, weak; −, none.