Table 2. Information concerning the 24 S.cerevisiae ORFs.
ORF name | Gene name | Codon bias | CAI codon usage index | Copies/cell | PCR product size (bp) | Patch |
---|---|---|---|---|---|---|
YKL058w | TOA2 | –0.08 | 0.10 | 2.70 | 261 | 1 |
YKL044w | n/a | 0.03 | 0.10 | 0.03 | 290 | 2 |
YKL066w | n/a | –0.14 | 0.07 | 0.90 | 392 | 3 |
YKL213c | DOA1 | 0.04 | 0.13 | 1.10 | 600 | 4 |
YKL185w | ASH1 | 0.03 | 0.12 | 1.20 | 598 | 5 |
YKL003c | MRP17 | 0.05 | 0.12 | 1.60 | 328 | 6 |
YKL092c | BUD2 | 0.04 | 0.14 | 0.20 | 516 | 7 |
YKL074c | MUD2 | 0.10 | 0.13 | 1.00 | 615 | 8 |
YKL012w | PRP40 | 0.04 | 0.13 | 1.20 | 590 | 9 |
YKL165c | MCD4 | 0.10 | 0.16 | 1.90 | 634 | 10 |
YKL189w | HYM1 | 0.10 | 0.15 | 0.60 | 679 | 11 |
YKL114c | APN1 | 0.06 | 0.14 | 1.20 | 700 | 12 |
YKL211c | TRP3 | 0.22 | 0.18 | 2.50 | 534 | 13 |
YKL007w | CAP1 | 0.16 | 0.18 | 1.50 | 584 | 14 |
YKL184w | SPE1 | 0.17 | 0.18 | 1.20 | 537 | 15 |
YKL016c | ATP7 | 0.25 | 0.22 | 2.80 | 450 | 16 |
YKL192c | ACP1 | 0.32 | 0.21 | 6.20 | 328 | 17 |
YKL142w | MRP8 | 0.24 | 0.20 | 1.50 | 547 | 18 |
YKL001c | MET14 | 0.34 | 0.27 | 1.30 | 473 | 19 |
YKL138c | MRPL31 | 0.24 | 0.23 | 1.00 | 362 | 20 |
YKL216w | URA1 | 0.24 | 0.23 | 16.20 | 535 | 21 |
YKL060c | FBA1 | 0.94 | 0.87 | 74.10 | 685 | 22 |
YKL056c | n/a | 0.83 | 0.73 | 47.40 | 439 | 23 |
YKL182w | FAS1 | 0.48 | 0.36 | 8.40 | 687 | 24 |
ORF names are indicated with accompanying gene names where available (n/a refers to an ORF where no gene name has been attributed). Codon bias, CAI codon adaptation index and copies of a given ORF per yeast cell are described in Materials and Methods.