Table 3.

Four- and six-class energy parameters for fold recognition and dimer interface recognition. Best four- and six-class energy parameters (kcal/mol) for monomeric proteins (upper right) and dimer interface recognition (lower left)

			Hα	Hβ	Hγ	P	Monomeric
			-6.96	1.81	-8.85	1.94	Hα = {LVIMC}
	Hα	-5.70		-0.59	0.15	1.56	Hβ = {AGSTP}
	Hβ	-0.60	-0.02		-6.41	1.53	Hγ = {FYW}
	Hγ	-3.68	-0.61	-7.08		-1.30	P = {EDNQKRH}
	P	1.75	0.04	0.63	1.21
	Dimeric	Hα	Hβ'	Hγ	P
		Hα	Hβ'	Hγ	Pα	Pβ	G	Monomeric
		-8.30	0.30	-5.11	3.77	2.62	0.43	Hα = {LVIMC}
Hα	-2.06		-1.35	1.49	0.42	1.30	2.54	Hβ' = {ASTP}
Hβ'	0.09	-0.02		-7.79	1.01	0.79	-0.85	Hγ = {FYW}
Hγ	-1.73	-0.45	-0.65		1.61	-3.30	1.00	Pα = {EDNQ}
Pα	0.76	0.13	0.36	0.52		1.57	-0.38	Pβ = {KRH}
Pβ	0.51	-0.24	-0.25	-0.30	0.53		-0.08	G
G	-0.17	0.12	-0.55	0.04	0.19	0.01
Dimeric	Hα	Hβ'	Hγ	Pα	Pβ	G