TABLE 6.
Nucleotide position
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Sequence | 18 | 21 | 93 | 104 | 126 | 135 | 145 | 156 | 174 | 204 | 206 | 208 | 209 | 224 | 239 | 243 | 262 | 264 | 337 | 354 | 361 | 364 | 372 | 402 |
mel | G | G | C | G | G | C | C | G | G | G | G | G | C | C | C | C | C | G | C | A | A | C | C | C |
46 | T | A | T | T | . | T | . | A | A | . | . | A | . | . | . | A | . | A | G | . | . | . | T | . |
47 | T | A | T | T | . | T | . | A | A | A | A | A | G | T | . | . | . | A | G | . | . | T | T | T |
48 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | . | . | A | G | . | . | . | T | . |
20 | T | A | . | T | . | T | T | A | A | A | A | A | G | T | . | . | . | A | G | . | . | . | T | . |
21 | . | A | . | . | . | T | . | . | . | A | A | . | G | T | A | . | . | A | G | . | . | . | T | . |
23 | T | A | . | T | . | T | T | A | A | A | A | A | G | T | . | A | . | A | G | . | . | . | T | . |
25 | . | . | . | . | A | . | . | . | . | A | A | A | G | T | . | . | A | . | . | G | T | . | . | . |
26 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | . | . | A | G | . | . | . | T | T |
27 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | A | . | A | G | . | . | . | T | T |
28 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | A | . | A | G | . | . | . | T | . |
29 | T | A | T | T | . | T | . | A | A | A | A | A | G | T | . | A | . | A | G | . | . | . | T | . |
30 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | . | . | A | G | . | . | . | T | . |
31 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | A | . | A | G | . | . | . | T | T |
33 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | A | . | A | G | . | . | . | T | T |
34 | T | A | T | T | . | T | . | A | A | A | A | A | G | T | . | . | . | A | G | . | . | . | T | . |
43 | T | A | T | T | . | T | . | A | A | A | A | A | G | T | . | A | . | A | G | . | . | . | T | . |
45 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | . | . | A | G | . | . | . | T | T |
10 | T | A | T | T | . | T | . | A | A | A | A | A | G | T | . | . | . | A | G | . | . | . | T | . |
13 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | A | . | A | G | . | . | . | T | . |
15 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | A | . | A | G | . | . | . | T | . |
16 | T | A | T | T | . | T | . | A | A | A | A | A | G | T | . | . | . | A | G | . | . | . | T | . |
18 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | . | . | A | G | . | . | . | T | . |
22 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | A | . | A | G | . | . | . | T | T |
36 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | . | . | A | G | . | . | . | T | . |
39 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | A | . | A | G | . | . | . | T | . |
41 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | . | . | A | G | . | . | . | T | . |
42 | T | A | . | T | . | T | . | A | A | A | A | A | G | T | . | . | . | A | G | . | . | . | T | . |
sim | G | G | C | G | G | C | C | G | G | G | G | G | C | C | C | C | C | G | C | A | A | C | C | C |
mel | C | G | G | G | G | C | A | G | T | C | G | C | C | C | T | C | A | C | T | A | C | C | T | T |
46 | T | . | . | A | . | T | . | A | G | T | A | . | T | . | . | G | G | . | . | C | T | . | G | . |
47 | . | A | . | A | . | . | . | A | G | . | A | G | T | . | . | G | G | A | C | C | T | . | . | . |
48 | T | . | . | A | . | . | . | A | . | T | A | G | T | . | G | G | G | A | C | C | T | . | . | . |
20 | T | . | . | A | . | T | . | A | G | T | A | G | T | . | . | G | G | A | C | C | T | T | . | . |
21 | . | . | . | A | . | T | . | . | . | T | . | . | . | T | . | . | . | . | . | C | . | . | . | . |
23 | T | . | . | A | . | T | . | A | G | T | A | G | T | . | . | G | G | A | C | C | T | . | . | . |
25 | . | . | . | A | . | . | . | A | . | T | A | G | T | . | . | G | G | . | . | . | . | . | . | . |
26 | . | . | A | . | . | . | . | A | . | T | A | . | T | . | . | G | G | A | C | C | T | T | . | . |
27 | . | . | A | A | . | T | . | A | G | T | A | G | T | . | . | G | G | A | C | C | T | T | . | . |
28 | T | . | A | . | . | . | . | A | . | T | A | . | T | . | . | G | G | A | C | C | T | T | . | . |
29 | T | . | . | A | . | T | T | A | . | T | A | . | T | . | . | G | G | A | C | C | T | . | . | . |
30 | T | . | . | A | A | . | T | A | . | T | A | . | T | . | . | T | G | A | C | C | T | T | . | . |
31 | . | . | A | A | . | T | . | A | G | T | A | G | T | . | . | G | G | A | C | C | . | . | . | . |
33 | . | . | A | A | . | T | T | A | G | T | A | G | T | . | G | G | G | . | . | C | T | T | . | . |
34 | T | . | A | . | . | . | . | A | . | T | A | . | T | . | . | G | G | A | C | C | T | . | . | . |
43 | T | . | . | A | . | . | . | A | G | T | A | G | T | . | . | G | G | A | C | C | T | T | . | . |
45 | . | . | A | A | . | T | . | A | . | T | A | G | T | . | . | G | G | A | C | C | T | T | . | A |
10 | T | . | . | A | . | T | . | A | G | T | A | G | T | . | . | G | G | A | C | C | T | T | . | . |
13 | T | . | A | A | . | T | . | A | G | T | A | . | T | . | . | G | G | A | C | C | T | . | . | . |
15 | T | . | . | . | . | . | . | A | . | T | A | G | T | . | . | G | G | A | C | C | T | T | . | . |
16 | T | . | . | A | . | T | . | A | G | T | A | G | T | . | . | G | G | A | C | C | T | T | . | . |
18 | T | . | . | A | . | . | . | A | . | T | A | . | T | . | . | G | G | A | C | C | T | T | . | . |
22 | . | . | A | . | . | . | . | A | . | T | A | . | T | . | . | G | G | A | C | C | T | T | . | . |
36 | T | . | . | A | . | T | . | A | G | T | A | G | T | . | . | G | G | A | C | C | T | T | . | . |
39 | T | . | A | A | . | T | . | A | G | T | A | G | T | . | . | G | G | A | C | C | T | T | . | . |
41 | T | . | A | A | . | T | . | A | G | T | A | . | T | . | . | G | G | A | C | C | T | T | . | . |
42 | T | . | . | A | . | T | . | A | G | T | A | G | T | . | . | G | G | A | C | C | T | T | . | . |
sim | C | G | G | G | G | C | A | G | T | C | G | C | C | C | T | C | A | C | T | A | C | C | T | T |
mel, melanogaster consensus sequence (and thus the inferred ancestral state); sim, simulans. Dots indicate that the site is the same as the melanogaster consensus sequence. Letters indicate that the site differs from the inferred ancestral state (and thus is inferred derived).