Table 1.
Partial probe and synthetic target sequences
| IRSS | Probe* | Synthetic Target** | IRSS | Probe* | Synthetic Target** |
| 1 | -GTAGTATTAGGAGCTCC-3' | -GGAGCTCCTAAT- | 55 | -GTAGTATCCGCTCCTCC-3' | -GGAGGAGCGGAT- |
| 2 | -GTAGTATAAGGAGCTCC-3' | -GGAGCTCCTTAT- | 56 | -GTAGTATTCGATCCTCC-3' | -GGAGGATCGAAT- |
| 3 | -GTAGTATAAGAAGCTCC-3' | -GGAGCTTCTTAT- | 57 | -GTAGTATCCGATCCTCC-3' | -GGAGGATCGGAT- |
| 4 | -GTAGTATCAGGAGCTCC-3' | -GGAGCTCCTGAT- | 58 | -GTAGTATTCGGTCCTCC-3' | -GGAGGACCGAAT- |
| 5 | -GTAGTATTAGAAGCTCC-3' | -GGAGCTTCTAAT- | 59 | -GTAGTATCCGGTCCTCC-3' | -GGAGGACCGGAT- |
| 6 | -GTAGTATTCGTAGCTCC-3' | -GGAGCTACGAAT- | 60 | -GTAGTATTAGGAGTTCC-3' | -GGAACTCCTAAT- |
| 7 | -GTAGTATCCGCAGCTCC-3' | -GGAGCTGCGGAT- | 61 | -GTAGTATCAGGAGTTCC-3' | -GGAACTCCTGAT- |
| 8 | -GTAGTATAAGGTCCTCC-3' | -GGAGGACCTTAT- | 62 | -GTAGTATTAGAAGTTCC-3' | -GGAACTTCTAAT- |
| 9 | -GTAGTATAAGATCCTCC-3' | -GGAGGATCTTAT- | 63 | -GTAGTATCAGAAGTTCC-3' | -GGAACTTCTGAT- |
| 10 | -GTAGTATACGTAGCTCC-3' | -GGAGCTACGTAT- | 64 | -GTAGTATTAGGTCTTCC-3' | -GGAAGACCTAAT- |
| 11 | -GTAGTATACGCAGCTCC-3' | -GGAGCTGCGTAT- | 65 | -GTAGTATCAGGTCTTCC-3' | -GGAAGACCTGAT- |
| 12 | -GTAGTATACGAAGCTCC-3' | -GGAGCTTCGTAT- | 66 | -GTAGTATTAGATCTTCC-3' | -GGAAGATCTAAT- |
| 13 | -GTAGTATACGGAGCTCC-3' | -GGAGCTCCGTAT- | 67 | -GTAGTATCAGATCTTCC-3' | -GGAAGATCTGAT- |
| 14 | -GTAGTATACGTTCCTCC-3' | -GGAGGAACGTAT- | 68 | -GTAGTATTCGTAGTTCC-3' | -GGAACTACGAAT- |
| 15 | -GTAGTATACGCTCCTCC-3' | -GGAGGAGCGTAT- | 69 | -GTAGTATCCGTAGTTCC-3' | -GGAACTACGGAT- |
| 16 | -GTAGTATACGATCCTCC-3' | -GGAGGATCGTAT- | 70 | -GTAGTATTCGCAGTTCC-3' | -GGAACTGCGAAT- |
| 17 | -GTAGTATACGGTCCTCC-3' | -GGAGGACCGTAT- | 71 | -GTAGTATCCGCAGTTCC-3' | -GGAACTGCGGAT- |
| 18 | -GTAGTATAAGGAGTTCC-3' | -GGAACTCCTTAT- | 72 | -GTAGTATTCGAAGTTCC-3' | -GGAACTTCGAAT- |
| 19 | -GTAGTATAAGAAGTTCC-3' | -GGAACTTCTTAT- | 73 | -GTAGTATCCGAAGTTCC-3' | -GGAACTTCGGAT- |
| 20 | -GTAGTATAAGGTCTTCC-3' | -GGAAGACCTTAT- | 74 | -GTAGTATTCGGAGTTCC-3' | -GGAACTCCGAAT- |
| 21 | -GTAGTATAAGGTCATCC-3' | -GGATGACCTTAT- | 75 | -GTAGTATCCGGAGTTCC-3' | -GGAACTCCGGAT- |
| 22 | -GTAGTATAAGGTCGTCC-3' | -GGACGACCTTAT- | 76 | -GTAGTATTCGTTCTTCC-3' | -GGAAGAACGAAT- |
| 23 | -GTAGTATAAGATCTTCC-3' | -GGAAGATCTTAT- | 77 | -GTAGTATCCGTTCTTCC-3' | -GGAAGAACGGAT- |
| 24 | -GTAGTATAAGATCATCC-3' | -GGATGATCTTAT- | 78 | -GTAGTATTCGCTCTTCC-3' | -GGAAGAGCGAAT- |
| 25 | -GTAGTATAAGATCGTCC-3' | -GGACGATCTTAT- | 79 | -GTAGTATCCGCTCTTCC-3' | -GGAAGAGCGGAT- |
| 26 | -GTAGTATACGTAGTTCC-3' | -GGAACTACGTAT- | 80 | -GTAGTATTCGATCTTCC-3' | -GGAAGATCGAAT- |
| 27 | -GTAGTATACGCAGTTCC-3' | -GGAACTGCGTAT- | 81 | -GTAGTATCCGATCTTCC-3' | -GGAAGATCGGAT- |
| 28 | -GTAGTATACGAAGTTCC-3' | -GGAACTTCGTAT- | 82 | -GTAGTATTCGGTCTTCC-3' | -GGAAGACCGAAT- |
| 29 | -GTAGTATACGGAGTTCC-3' | -GGAACTCCGTAT- | 83 | -GTAGTATCCGGTCTTCC-3' | -GGAAGACCGGAT- |
| 30 | -GTAGTATACGTTCATCC-3' | -GGATGAACGTAT- | 84 | -GTAGTATTAGGTCATCC-3' | -GGATGACCTAAT- |
| 31 | -GTAGTATACGTTCGTCC-3' | -GGACGAACGTAT- | 85 | -GTAGTATCAGGTCATCC-3' | -GGATGACCTGAT- |
| 32 | -GTAGTATACGTTCTTCC-3' | -GGAAGAACGTAT- | 86 | -GTAGTATTAGATCATCC-3' | -GGATGATCTAAT- |
| 33 | -GTAGTATACGCTCATCC-3' | -GGATGAGCGTAT- | 87 | -GTAGTATCAGATCATCC-3' | -GGATGATCTGAT- |
| 34 | -GTAGTATACGCTCGTCC-3' | -GGACGAGCGTAT- | 88 | -GTAGTATTCGTTCATCC-3' | -GGATGAACGAAT- |
| 35 | -GTAGTATACGATCTTCC-3' | -GGAAGATCGTAT- | 89 | -GTAGTATCCGTTCATCC-3' | -GGATGAACGGAT- |
| 36 | -GTAGTATACGATCATCC-3' | -GGATGATCGTAT- | 90 | -GTAGTATTCGCTCATCC-3' | -GGATGAGCGAAT- |
| 37 | -GTAGTATACGATCGTCC-3' | -GGACGATCGTAT- | 91 | -GTAGTATCCGCTCATCC-3' | -GGATGAGCGGAT- |
| 38 | -GTAGTATACGGTCTTCC-3' | -GGAAGACCGTAT- | 92 | -GTAGTATTCGATCATCC-3' | -GGATGATCGAAT- |
| 39 | -GTAGTATACGGTCATCC-3' | -GGATGACCGTAT- | 93 | -GTAGTATCCGATCATCC-3' | -GGATGATCGGAT- |
| 40 | -GTAGTATACGGTCGTCC-3' | -GGACGACCGTAT- | 94 | -GTAGTATTCGGTCATCC-3' | -GGATGACCGAAT- |
| 41 | -GTAGTATCAGAAGCTCC-3' | -GGAGCTTCTGAT- | 95 | -GTAGTATCCGGTCATCC-3' | -GGATGACCGGAT- |
| 42 | -GTAGTATTAGGTCCTCC-3' | -GGAGGACCTAAT- | 96 | -GTAGTATTAGGTCGTCC-3' | -GGACGACCTAAT- |
| 43 | -GTAGTATCAGGTCCTCC-3' | -GGAGGACCTGAT- | 97 | -GTAGTATCAGGTCGTCC-3' | -GGACGACCTGAT- |
| 44 | -GTAGTATTAGATCCTCC-3' | -GGAGGATCTAAT- | 98 | -GTAGTATTAGATCGTCC-3' | -GGACGATCTAAT- |
| 45 | -GTAGTATCAGATCCTCC-3' | -GGAGGATCTGAT- | 99 | -GTAGTATCAGATCGTCC-3' | -GGACGATCTGAT- |
| 46 | -GTAGTATCCGTAGCTCC-3' | -GGAGCTACGGAT- | 100 | -GTAGTATTCGTTCGTCC-3' | -GGACGAACGAAT- |
| 47 | -GTAGTATTCGCAGCTCC-3' | -GGAGCTGCGAAT- | 101 | -GTAGTATCCGTTCGTCC-3' | -GGACGAACGGAT- |
| 48 | -GTAGTATTCGAAGCTCC-3' | -GGAGCTTCGAAT- | 102 | -GTAGTATTCGCTCGTCC-3' | -GGACGAGCGAAT- |
| 49 | -GTAGTATCCGAAGCTCC-3' | -GGAGCTTCGGAT- | 103 | -GTAGTATCCGCTCGTCC-3' | -GGACGAGCGGAT- |
| 50 | -GTAGTATTCGGAGCTCC-3' | -GGAGCTCCGAAT- | 104 | -GTAGTATTCGATCGTCC-3' | -GGACGATCGAAT- |
| 51 | -GTAGTATCCGGAGCTCC-3' | -GGAGCTCCGGAT- | 105 | -GTAGTATCCGATCGTCC-3' | -GGACGATCGGAT- |
| 52 | -GTAGTATTCGTTCCTCC-3' | -GGAGGAACGAAT- | 106 | -GTAGTATTCGGTCGTCC-3' | -GGACGACCGAAT- |
| 53 | -GTAGTATCCGTTCCTCC-3' | -GGAGGAACGGAT- | 107 | -GTAGTATCCGGTCGTCC-3' | -GGACGACCGGAT- |
| 54 | -GTAGTATTCGCTCCTCC-3' | -GGAGGAGCGAAT- | 108 | -GTAGTATACGCTCTTCC-3' | -GGAAGAGCGTAT- |
* Entire probe sequence: 5'-GAA GAG TAT GGT TTC GTA TAC GTA AAA AAA AAA AAA AAA AAA AAA AXX XXX XXX XXX XXX XXX-3' (X represents tabulated probe sequence for clonotypes 1–108)
**Entire synthetic target sequence: Cy3–5'-CGG CCC GAA GTA CTG CTC GTA XXX XXX XXX XXX ACT ACT GGC ACA GAG ATA GAA AGC TGT CGG GTT CTT TTG G-3' (X represents tabulated synthetic target sequence for clonotypes 1–108)