Table 1.
Description of rice expression data used for whole-genome local coexpression analysis
| MPSS | MA | |
|---|---|---|
| Genes with expression | ||
| Excluding overlapping genes | 23,146 | 14,789 |
| Without expressed neighbor(s) | 5,081 | 5,438 |
| represented in pairs | 18,065 | 9,351 |
| Adjacent pairs | ||
| Total | 12,920 | 6,032 |
| Tandemly duplicated pairs (td) | 1,663 (12.9%)a | 573 (9.5%)a |
| Coexpressed | 584 (4.5%)b | 320 (5.3%)b |
| Total excluding td | 11,257 | 5,459 |
| Coexpressed excluding td | 438 (3.9%)c | 288 (5.3%)c |
| Coexpressed adjacent pairs | ||
| Total | 584 | 320 |
| Tandemly duplicated pairs | 146 (25%)d | 32 (10%)d |
| Tandemly duplicated pairs | ||
| Total | 1,663 | 573 |
| Coexpressed | 146 (8.8%)e | 32 (5.6%) e |
aPercentage of tandemly duplicated pairs relative to the total number of adjacent pairs
bPercentage of coexpressed adjacent pairs relative to the total number of adjacent pairs
cPercentage of coexpressed adjacent pairs excluding td relative to the total number of adjacent pairs excluding tandemly duplicated pairs
dPercentage of coexpressed tandemly duplicated pairs relative to the total number of coexpressed adjacent pairs
ePercentage of coexpressed tandemly duplicated pairs relative to the total number of tandem duplicated pairs