Table 4.
Distribution of gene pairs over GOslim categories (Non-duplicated pairs)
| Alla | Coexpressedb | Non-coexpressedc | P-valued | |
|---|---|---|---|---|
| MPSS | ||||
| GO_func | ||||
| coverede | 2502 | 100 | 2402 | 0.42 |
| sameKnCatf | 365 (14.6%) | 12 (12.0%) | 353 (14.7%) | |
| GO_proc | ||||
| Covered | 1366 | 50 | 1316 | 0.47 |
| sameKnCat | 144 (10.5%) | 7 (14%) | 137 (10.4%) | |
| GO_comp | ||||
| Covered | 383 | 17 | 366 | 0.60 |
| sameKnCat | 113 (29.5%) | 6 (35.3%) | 107 (29.2%) | |
| MA | ||||
| GO_func | ||||
| coverede | 1365 | 83 | 1282 | 0.13 |
| sameKnCatf | 177 (13.0%) | 7 (8.43%) | 170 (13.3%) | |
| GO_proc | ||||
| Covered | 707 | 43 | 664 | 0.13 |
| sameKnCat | 67 (9.48%) | 2 (4.65%) | 65 (9.79%) | |
| GO_comp | ||||
| Covered | 202 | 10 | 192 | 0.24 |
| sameKnCat | 45 (22.3%) | 4 (40%) | 41 (21.4%) | |
aNumber of neighboring pairs excluding td. All other pairs are all duplicate-free, unless stated otherwise
bNumber of coexpressed pairs
cNumber of non-coexpressed pairs
dP value from the standard normal tables of the z statistic for the difference of the population proportion between coexpressed pairs and non-coexpressed pairs in the rice genome; *, significant (two-tailed; P < 0.05). The P value is the probability under the null hypothesis that the two population proportions are the same
eNumber of pairs of which both members are assigned (covered) with GOslim categories
fNumber of pairs of which both members fall into the same “known” GOslim category (excluding the categories with the indications ‘unknown’ and ‘other’). Percentage is the number of pairs relative to the number of pairs covered