Skip to main content
. 2007 Sep 15;13(12):1245–1257. doi: 10.1007/s00894-007-0239-y

Table 5.

Interaction energy (kcal mol−1) between stacked DNA base pairs in terms of the additivity scheme, computed at KT1/TZ2Pa,b

System TW ΔEAC ΔEBD ΔEAD ΔEBC ΔEadd ΔEcoop ΔEint
AT-AT 0 −1.23 +1.26 −1.24 −1.24 −2.45 +1.04 −1.41
AT-AT 36 −5.27 −3.93 −1.11 −0.93 −11.24 +1.11 −10.13
AT-AT 180 −1.84 +0.39 −5.44 −5.44 −12.33 +1.62 −10.71
AU-AU 0 −1.23 +0.94 −1.37 −1.37 −3.03 +1.17 −1.86
AU-AU 36 −5.27 −3.00 −1.20 −1.08 −10.55 +1.20 −9.35
AU-AU 180 −1.84 +0.28 −4.67 −4.67 −10.90 +1.73 −9.17
GC-GC 0 +2.15 +2.83 −4.90 −4.90 −4.82 +4.42 −0.40
GC-GC 36 −2.08 −1.32 −3.44 −4.71 −11.55 +3.92 −7.63
GC-GC 180 −7.59 −2.60 −1.52 −1.52 −13.23 +1.98 −11.25

aSee Scheme 6: Inline graphic

bPost-SCF on LDA/TZ2P orbitals / densities.