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. Author manuscript; available in PMC: 2008 Aug 10.
Published in final edited form as: J Mol Biol. 2007 Jun 2;371(2):308–316. doi: 10.1016/j.jmb.2007.05.077

Table 1.

Thermodynamic parameters for unfolding of free Ub, free Bn, and the Bn domain of BU. Bn and BU parameters are determined from multi-wavelength fits of fluorescence data. Ub parameters are obtained from fitting CD ellipticity at 230 nm. Sample conditions are 1–2 μM protein, 10 mM sodium acetate (pH 5.0), 0.1 M NaCl, 10 °C. Reported values are the averages of three measurements. Standard deviations are typically ± 0.2–0.4 kcal·mol−1 (ΔGappH2O), ± 0.1–0.3 kcal·mol−1·M−1 (mapp), ± 0.01–0.02 M (Cm).

Protein Variant ΔGappH2O (kcal·mol−1) mapp (kcal·mol−1·M−1) Cm (M)
Ub WT 6.9 1.9 3.63
Ub R42E 7.2 1.8 4.00
Ub K29Q 6.7 1.8 3.72
Ub K29N 5.7 1.9 3.00
Ub V26A 4.4 2.1 2.10
Ub V26G 1.8 2.5 0.72

Bn WT 11.8 4.6 2.58
Bn I96V 8.9 3.8 2.38
Bn I96A 8.7 4.5 1.96

BU WT 3.8 4.3 0.87
BU R42E 3.7 4.2 0.87
BU K29Q 3.6 4.0 0.90
BU K29N 4.0 3.8 1.04
BU V26A 7.3 4.6 1.57
BU V26G 7.5 4.8 1.56
BU I96V n.d.a n.d. 0.72b
BU I96A n.d. n.d. 0.35b
a

Not determined due to insufficient native baseline.

b

Obtained from constrained fits of Fmax values (see text).