Table 1.
Loci used in this study
| Locus | Coding/Non-coding | Genomic location in D. melanogastera | Length | Reference | Tree lengthb |
|---|---|---|---|---|---|
| Adh | coding | 2L (35B3) | 834 | Ko et al. (2003) | 0.57 |
| Adhr | coding | 2L (35B3) | 875 | Ko et al. (2003) | 0.88 |
| ry | coding | 3R (87D9) | 4098 | Ko et al. (2003) | 0.99 |
| Gld | coding | 3R (84D3) | 1549 | Ko et al. (2003) | 0.85 |
| mitch | coding | 3 (87D5) | 699 | Goldberg et al. (unpublished) | 1.79 |
| hb | coding | 3R (85A5) | 534 | Schawaroch (2000) | 1.61 |
| CG3066 | coding | 3R (84D14-E1) | 872 | This study | 1.42 |
| CG4928 | coding | X (15C1-4) | 1536 | This study | 0.43 |
| CG7415 | coding | 3R (84F13) | 788 | This study | 1.02 |
| CG9336 | coding | 2L (38F3) | 378 | This study | 0.67 |
| seq211 | non-coding | X (3C5) | 2859 | This study | 1.25 |
| Iris | coding | 2L (21F1) | 1620 | Malik and Henikoff (2005) | 2.53 |
a
Chromosome arm and cytological band.
b
Total tree length in expected substitutions per site, from the maximum likelihood tree.