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. 2007 Aug 29;4:82. doi: 10.1186/1743-422X-4-82

Table 2.

Functional classification of some of the genes of interest.

Gene ID Fold Change
Toll-Like Receptors

AF051151 toll-like receptor 5 1.46 ± 0.50
AF177765 toll-like receptor 4 0.67 ± 0.27
AL050262 toll-like receptor 1 0.41 ± 0.13
AL570789 toll-like receptor 3 1.47 ± 0.48
NM_003264 toll-like receptor 2 0.50 ± 0.19

Cytokines

NM_001558 interleukin 10 receptor, alpha 0.18 ± 0.09
S36219 prostaglandin-endoperoxide synthase 1 0.30 ± 0.06
AV707896 Small inducible cytokine subfamily E, member 1 0.33 ± 0.11
D87931 Rho-associated, protein kinase 2 0.40 ± 0.13
NM_003809 tumor necrosis factor (ligand) superfamily, 0.42 ± 0.25
NM_005211 colony stimulating factor 1 receptor 0.46 ± 0.18
NM_001380 dedicator of cytokinesis 1 0.47 ± 0.24
NM_004120 guanylate binding protein 2, interferon-inducible 1.91 ± 0.29
NM_002988 chemokine (C-C motif) ligand 18 2.23 ± 0.81
NM_002186 interleukin 9 receptor 3.17 ± 2.37
AB006967 suppressor of cytokine signaling 3 3.60 ± 2.87
NM_005408 chemokine (C-C motif) ligand 13 6.00 ± 3.46

Neuronal related genes

NM_005045 reelin 0.32 ± 0.12
NM_006334 olfactomedin 1 0.34 ± 0.17
AF165124 gamma-aminobutyric acid (GABA) A receptor, 0.35 ± 0.11
AU134339 Ceroid-lipofuscinosis, neuronal 3, juvenile 0.37 ± 0.22
NM_000727 calcium channel, voltage-dependent, gamma 0.43 ± 0.18
X57548 cadherin 2, type 1, N-cadherin (neuronal) 0.44 ± 0.05
NM_000742 cholinergic receptor, nicotinic, alpha 2 (neuronal) 0.44 ± 0.18
NM_005612 RE1-silencing transcription factor 0.49 ± 0.15
NM_002738 protein kinase C, beta 1 0.49 ± 0.30
BG169625 Enolase 2 (gamma, neuronal) 0.50 ± 0.20
NM_001830 chloride channel 4 0.55 ± 0.28
M34064 cadherin 2, type 1, N-cadherin (neuronal) 0.58 ± 0.38
NM_002522 neuronal pentraxin I 0.61 ± 0.44
AF166003 potassium voltage-gated channel, member 1 1.95 ± 0.68
NM_004061 cadherin 12, type 2 (N-cadherin 2) 1.98 ± 0.82
AA975079 Ankyrin 2, neuronal 2.22 ± 0.57
NM_000620 nitric oxide synthase 1 (neuronal) 2.27 ± 0.38
AI986443 Similar to neuronal pentraxin receptor isoform 2 2.60 ± 0.40
AK001991 leucine rich repeat neuronal 3 2.80 ± 1.35
AF169693 protocadherin 20 3.02 ± 1.50
NM_014211 gamma-aminobutyric acid (GABA) A receptor, pi 3.17 ± 2.99
X90846 mitogen-activated protein kinase kinase kinase 10 6.00 ± 1.85
AA243675 Solute carrier family 1 7.37 ± 2.78
AI912373 Neuronal guanine nucleotide exchange factor 29.3 ± 7.91

Caspase pathway

NM_001223 caspase 1 0.26 ± 0.16
NM_004131 granzyme B 1.68 ± 0.47
AU125557 Caspase 3 2.09 ± 0.88
H22169 Lamin A/C 3.62 ± 0.80
NM_001230 caspase 10 4.43 ± 1.33
AA041298 Caspase 4 28.3 ± 5.56

Induction of Apoptosis

AF181850 inhibitor of growth family, member 1 2.09 ± 0.40
AI591151 parathyroid hormone-like hormone 21.6 ± 7.25
L26165 cyclin-dependent kinase inhibitor 1A 2.11 ± 0.84
NM_000546 tumor protein p53 2.37 ± 1.05
NM_001230 caspase 10 4.43 ± 1.33
NM_002048 growth arrest-specific 1 4.14 ± 0.80
NM_003123 sialophorin (leukosialin, CD43) 3.01 ± 1.10
X90846 mitogen-activated protein kinase kinase kinase 10 6.00 ± 1.85

Integrins

BG032225 integrin beta 1 binding protein 1 0.63 ± 0.06
N95414 Integrin, alpha 2 0.39 ± 0.23
NM_000885 integrin, alpha 4 0.50 ± 0.21
NM_000887 integrin, alpha X 0.27 ± 0.17
AW513695 Integrin, beta 1 0.46 ± 0.18
AL581999 Integrin, beta 7 0.31 ± 0.07
AA569711 Integrin, beta 8 0.65 ± 0.15

Immune Response

M12824 CD8a molecule 0.20 ± 0.12
NM_002647 phosphoinositide-3-kinase, class 3 0.23 ± 0.11
NM_003998 nuclear factor of kappa light polypeptide 0.32 ± 0.11
NM_000569 Fc fragment of IgG, low affinity IIIa, receptor 0.34 ± 0.11
NM_001734 complement component 1, s subcomponent 0.34 ± 0.18
AF077196 regulatory factor X-associated ankyrin-containing 0.36 ± 0.14
AL050262 toll-like receptor 1 0.41 ± 0.13
X14831 carcinoembryonic antigen-related cell adhesion 0.42 ± 0.20
S82807 thyroid stimulating hormone receptor 2.17 ± 1.22
L13210 lectin, galactoside-binding protein 2.32 ± 0.42
AF004231 leukocyte immunoglobulin-like receptor 2.41 ± 1.45
M14058 complement component 1, r subcomponent 2.51 ± 2.44
NM_003123 sialophorin (leukosialin, CD43) 3.01 ± 1.10
NM_000063 complement component 2 3.26 ± 1.16
NM_003319 titin 3.68 ± 1.64
NM_003804 (TNFRSF)-interacting serine-threonine kinase 1 3.69 ± 1.82
NM_004415 desmoplakin 4.91 ± 4.10
D90277 carcinoembryonic antigen-related cell adhesion 6.81 ± 4.05