Table 4.
Enriched GOTERM Biological Process in the list of alternatively spliced genes
Up-regulated splice variants, with fold change [≥1] at 4 h | Gene Count | % | P-Value* |
regulation of protein metabolism | 5 | 5.7 | 0.029 |
cellular protein metabolism | 24 | 27.3 | 0.041 |
phosphate metabolism | 9 | 10.2 | 0.097 |
cytoskeleton organization and biogenesis | 5 | 5.7 | 0.16 |
RNA metabolism | 5 | 5.7 | 0.23 |
biopolymer modification | 12 | 13.6 | 0.27 |
macromolecule biosynthesis | 6 | 6.8 | 0.49 |
Down regulated splice variants, with fold change [≥1] at 4 h | |||
cellular lipid metabolism | 15 | 6.4 | 0.0094 |
negative regulation of cellular metabolism | 8 | 3.4 | 0.035 |
membrane lipid metabolism | 6 | 2.6 | 0.042 |
regulation of progression through cell cycle | 13 | 5.5 | 0.044 |
intracellular transport | 15 | 6.4 | 0.058 |
biopolymer modification | 33 | 14.0 | 0.06 |
establishment of cellular localization | 15 | 6.4 | 0.063 |
DNA metabolism | 15 | 6.4 | 0.073 |
amino acid metabolism | 8 | 3.4 | 0.073 |
protein catabolism | 7 | 3.0 | 0.1 |
intracellular protein transport | 9 | 3.8 | 0.1 |
biopolymer catabolism | 7 | 3.0 | 0.13 |
regulation of protein kinase activity | 5 | 2.1 | 0.15 |
carboxylic acid metabolism | 11 | 4.7 | 0.15 |
endocytosis | 5 | 2.1 | 0.17 |
cofactor biosynthesis | 5 | 2.1 | 0.18 |
steroid metabolism | 5 | 2.1 | 0.18 |
negative regulation of cell proliferation | 5 | 2.1 | 0.2 |
lipid biosynthesis | 6 | 2.6 | 0.22 |
regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolism | 37 | 15.7 | 0.26 |
apoptosis | 11 | 4.7 | 0.31 |
transcription | 37 | 15.7 | 0.33 |
cellular macromolecule catabolism | 7 | 3.0 | 0.36 |
protein complex assembly | 6 | 2.6 | 0.4 |
protein transport | 10 | 4.3 | 0.44 |
chromosome organization and biogenesis | 6 | 2.6 | 0.44 |
vesicle-mediated transport | 7 | 3.0 | 0.45 |
synaptic transmission | 5 | 2.1 | 0.46 |
*The gene-enrichment of functional categories was measured by determining the number of genes, belonging to the functional group in the list of modulated genes weigh against to the total analysed genes on arrays (background) using Fisher Exact test.