TABLE 3.
Oligodeoxynucleotides used in this studya
| Oligodeoxynucleotide | Sequence | Sequence amplified |
|---|---|---|
| Ebm106 | CACCGAATTCATGCAAACACAAATC | ybaW |
| Ebm107 | ACCGCTCGAGAAGCTTACTTAACCATCTG | ybaW |
| Ebm144 | CACCGAATTCATGTCTACAACACATAAC | yciA |
| Ebm145 | ACCGCTCGAGAAGCTTACTCAACAGGTAAGGC | yciA |
| Ebm146 | CACCGAATTCATGATATGGAAACGGAAAATC | ydiI |
| Ebm147 | ACCGCTCGAGAAGCTTACAAAATGGCGGTCGTC | ydiI |
| Ebm148 | CACCGAATTCATGAAGTGTAAGGATGATATG | yigI |
| Ebm149 | ACCGCTCGAGAAGCTTAACCTACCATATAGGTG | yigI |
| Ebm163 | CACCGAATTCATGGTAGATAAACGCGAATCC | fabA |
| Ebm164 | ACCGCTCGAGAAGCTTAGAAGGCAGACGTATCCTG | fabA |
| Ebm196 | AGAATTCATGATCTGGAAACGCCATTTAACGC | entH |
| Ebm197 | ACTCGAGAAGCTTCATCCCAAAACTGC | entH |
| Ebm198 | AGAATTCATGAGTCATAAGGCCTGGCAAAATG | paaI |
| Ebm199 | ACTCGAGAAGCTTCAGGCTTCTCCTG | paaI |
| Ebm223 | TTCCATGGATCCCAAAACTGCCGTACC | entH |
| Ebm226 | GGGCGGCGTTGCTGCACTTGTCGGCTGGGTACGGCAGTTTTGGGATCCATGGAAAAGAGAAG | TAP-Kanr cassette |
| Ebm227 | TCCGTTAACCGAGTTTTCCTGCAATCTCATCTAATTCTGTCGGGTCATATGAATATCCTCCTTAG | TAP-Kanr cassette |
| Ebm243 | CACCGAATTCATGGCTATTCCAAAATTA | entB |
| Ebm244 | ACTCGAGAAGCTTTATTTCACCTCGCG | entB |
| Ebm250 | ACTCGAGAAGCTTTACCTGTTTAGCGTTG | entF |
| Ebm251 | TCGACTACGGTCTGGATGCCGTACGCATGATGGCGCTGGC | entB(S245A) |
| Ebm252 | GCCAGCGCCATCATGCGTACGGCATCCAGACCGTAGTCGA | entB(S245A) |
| Ebm262 | CACCCTGCAGATGAGCCAGCATTTACC | entF |
| Ebm308 | CACCGAATTCATGGATTTCAGCGGTAA | entA |
| Ebm309 | ACTCGAGAAGCTTTTATGCCCCCAGCGTTG | entA |
| Ebm310 | CACCTCTAGAAATGGATACGTCACTGGC | entC |
| Ebm311 | ACTCGAGTTAATGCAATCCAAAAACGTT | entC |
| Ebm312 | CACCGAATTCATGAGCATTCCATTCAC | entE |
| Ebm313 | ACTCGAGAAGCTTCAGGCTGATGCGCGTG | entE |
| ybgC5′ | CACCGAATTCGTGAATACAACGCTGTTTCG | ybgC |
| ybgC3′ | ACCGCTCGAGTCACTGCTTAAACTCCGCG | ybgC |
| Ebm342 | CACCGAATTCGTGGTGATGACTGAAGAA | entB ArCP |
| Ebm343 | CACCCTCGAGAAGCTTTACAGTAATTCTTCAGT | entB ICL |
| Ebm363 | GATTATAAAGATGACGATGACAAG | Flag up |
| Ebm364 | CTAGCTTGTCATCGTCATCTTTATAATCTGCA | Flag down |
a
The oligodeoxynucleotides were provided by Eurogentec SA.