TABLE 1.
Probeb | Type | Specificity (%)c | Sensitivity (%)d | Fluorescence (%) | Reference(s) |
---|---|---|---|---|---|
HP16S-1 | DNA | 82 | 82 | 41-60 | 19 |
Hpy-1 | DNA | 86 | 95 | 0-5 | 5a, 8a, 23, 23a |
Hprobe | PNA | 100 | 25 | 6-20 | 4, 25a |
Hpy769 | PNA | 85 | 89 | 6-20 | This work |
Estimation of binding affinity through fluorescence intensity was based on the work of Fuchs et al. (10).
Sequences are as follows: HP16S-1, 5′-GGA GTA TCT GGT ATT AAT CAT CG-3′; Hpy-1, 5′-CAC ACC TGA CTG ACT ATC CCG-3′; Hprobe, 5′-TAATCAGCACTCTAGCAA-3′. The sequence of Hpy769 is given in the text.
Calculated as (number of H. pylori strains detected by the probe)/(total number of bacterial strains detected by the probe) × 100.
Calculated as (number of H. pylori strains detected by the probe)/(total number of H. pylori strains in the databases) × 100.