TABLE 3.
Comparisons of DNA pyrosequencing-based identifications and results obtained by Sanger sequencing of the 16S rRNA gene
| Organism per pyrosequencing | Organism per Sanger sequencing | % Agreement |
|---|---|---|
| Achromobacter spp. | Achromobacter xylosoxidans | 100 |
| Burkholderia cepacia complex | Burkholderia spp. | 100 |
| Burkholderia spp. | Burkholderia spp. | 100 |
| Burkholderia spp. | Burkholderia spp. | 100 |
| Campylobacter coli | Campylobacter jejuni/ Campylobacter coli | 100 |
| Corynebacterium spp. | Corynebacterium pseudodiphtheriticum/ Corynebacterium propinquum | 100 |
| Curtobacterium spp. | Curtobacterium spp. | 100 |
| Eggerthella lenta | Eggerthella lenta | 99 |
| Kocuria kristinae | Kocuria kristinae | 97 |
| Microbacterium spp. | Microbacterium hominis | 98 |
| Microbacterium spp. | Microbacterium oxydans/ Microbacterium maritypicum | 99 |
| Moraxella spp. | Moraxella nonliquefaciens | 99 |
| Neisseria elongata | Neisseria elongata | 98 |
| Neisseria weaveri | Neisseria weaveri | 99 |
| Ochrobactrum tritici | Ochrobactrum anthropi | 100 |
| Pseudomonas aeruginosa | Pseudomonas aeruginosa | 100 |
| Pseudomonas aeruginosa | Pseudomonas alcaliphila | 100 |
| Rhodococcus corynebacterioides | Rhodococcus corynebacterioides | 99 |
| Rhodococcus equi | Rhodococcus equi | 99 |
| Rothia mucilaginosa | Rothia mucilaginosa | 93 |
| Salmonella enterica serovar Typhi | Salmonella enterica serovar Typhi | 100 |
| Shewanella spp. | Shewanella spp. | 100 |
| Staphylococcus aureus | Staphylococcus aureus | 100 |
| Staphylococcus spp. not aureus | Staphylococcus sciuri | 100 |
| Streptococcus mitis group | Streptococcus mitis/Streptococcus infantis | 100 |
| Streptococcus thermophilus | Streptococcus salivarius/thermophilus | 99 |