TABLE 3.
Genes for which cis natural S-AS pairs were identified and their properties
| Pair | Genea | No. of S clones | Library | No. of AS clones | Library | Predicted temporal association | Predicted classification of AS pairsb |
|---|---|---|---|---|---|---|---|
| 1 | UL12 | 1 | E | 2 | L | Discordant | Divergent |
| 2 | UL13 | 6 | IE, L | 1 | E | Discordant | Divergent, full overlap |
| 3 | UL21 | 3 | IE | 2 | IE | Concordant | Divergent |
| 4 | UL22A | 2 | IE | 3 | IE | Concordant | Intronic |
| 5 | UL23 | 3 | IE, L | 1 | L | Discordant | Divergent |
| 6 | UL24 | 2 | L | 3 | L | Concordant | Divergent, convergent |
| 7 | UL25 | 5 | L | 1 | IE | Discordant | Divergent, intronic |
| 8 | UL29 | 3 | IE | 1 | L | Discordant | Divergent |
| 9 | UL36 | 3 | IE, E | 1 | E | Concordant | Divergent, full overlap |
| 10 | UL37 | 5 | IE, L | 1 | E | Discordant | Convergent |
| 11 | UL52 | 6 | E, L | 1 | L | Concordant | Divergent |
| 12 | UL61 | 2 | L | 10 | E, L | Concordant | Divergent |
| 13 | UL62 | 3 | L | 12 | E, L | Concordant | Convergent, divergent, full overlap |
| 14 | UL63 | 19 | E, L | 3 | L | Concordant | Convergent, divergent, full Overlap |
| 15 | UL64 | 4 | L | 21 | E, L | Concordant | Convergent, divergent, full overlap |
| 16 | UL65 | 20 | E, L | 3 | L | Concordant | Convergent, divergent, full overlap |
| 17 | UL66 | 1 | L | 18 | E, L | Concordant | Divergent, full overlap |
| 18 | UL67 | 1 | L | 17 | E, L | Concordant | Divergent, full overlap |
| 19 | UL70 | 1 | L | 4 | IE, L | Concordant | Divergent, full overlap |
| 20 | UL72 | 1 | L | 3 | E, L | Concordant | Divergent, full overlap |
| 21 | UL73 | 3 | E, L | 1 | L | Concordant | Full overlap |
| 22 | UL74 | 1 | L | 3 | E, L | Concordant | Full overlap, intronic |
| 23 | UL88 | 1 | L | 2 | L | Concordant | Divergent |
| 24 | UL89 | 1 | L | 2 | L | Concordant | Divergent, convergent |
| 25 | UL92 | 1 | L | 1 | L | Concordant | Divergent, intronic |
| 26 | UL102 | 2 | L | 2 | L | Concordant | Convergent, divergent, |
| 27 | UL108 | 2 | IE, L | 1 | IE | Concordant | Convergent |
| 28 | UL111 | 6 | IE, L | 2 | IE, L | Concordant | Convergent, full overlap |
| 29 | UL111A | 1 | L | 2 | L | Concordant | Full overlap |
| 30 | UL112 | 5 | IE, L | 1 | L | Concordant | Divergent |
| 31 | UL115 | 4 | IE, L | 2 | L | Concordant | Divergent, intronic, full overlap |
| 32 | UL116 | 2 | IE | 2 | L | Discordant | Divergent, intronic, full overlap |
| 33 | RL2 | 6 | E, L | 15 | E, L | Concordant | Convergent, divergent, full overlap |
| 34 | RL3 | 7 | E, L | 189 | E, L | Concordant | Convergent, divergent, full overlap |
| 35 | RL4 | 167 | E, L | 4 | E, L | Concordant | Convergent |
| 36 | TRS1 | 1 | IE, E, L | 1 | L | Concordant | Full overlap |
| 37 | US32 | 1 | L | 1 | L | Concordant | Divergent |
| 38 | US33 | 1 | L | 4 | IE, E, L | Concordant | Convergent, divergent, intronic |
a
Bold indicates sequence analysis confirmed a genuine poly(A) tail of the AS member of the pair.
b
Italicized “full overlap” designations are tentative because the 3′ ends were not sequenced.