. Author manuscript; available in PMC: 2008 Oct 1.

Published in final edited form as: J Biomed Inform. 2007 Jan 17;40(5):453–464. doi: 10.1016/j.jbi.2007.01.001

Table 5.

Gene clusters and gene pathways

Dominant pathways of the cluster	Parsed Network Cluster			Co-occurrence Network Cluster
Dominant pathways of the cluster	Cluster Size	Related Genes	Related Genes %	Cluster Size	Related Genes	Related Genes %
P53/apoptosis pathway	83	54	65.06	76	48	63.16
Cytokine signaling & immune response	74	59	79.73	107	76	71.03
Cell cycle regulation & tumorigenesis	53	39	73.58	53	39	73.58
MAPK signaling pathway	45	39	86.67	36	30	83.33
Small GTPase mediated signaling	24	22	91.67	10	8	80.00