Table 1. RT-PCR Primers Sequences.
Primer name | Forward sequence | Fwd Tm | Reverse sequence | Rev Tm | Product length |
---|---|---|---|---|---|
General | |||||
NR1 general | cagaaacccctcagacaagttc | 59°C | cttctgtgaagcctcaaactcc | 59°C | 213bp |
NR1 generic | ccctcagacaagttcatctacgc | 61°C | aggttcttcctccacacgttcac | 61°C | 563bp |
GAPDH | ccttcattgacctcaactacatggtcta | 63°C | tagcccaggatgcccttt | 55°C | 720bp |
Exon 5 or N1 | |||||
NR1a Exon 5 (−) | gcgagtctacaactggaaccac | 61°C | ctcgcttgcagaaaggatgatg | 59°C | 170bp |
NR1b Exon 5 (+) | 235bp | ||||
Exon 5+ inside | ggaactatgaaaacctcgacc | 58°C | NR1b Exon 5 Reverse | 59°C | 158bp |
N1+ (ζ1 N1+) | accacttcactcccacccctgtctcctac | 72°C | gtccgcgcttgttgtcata | 61°C | 330bp |
N1− (ζ1 N1−) | agctcaacgccacttctgtc | 61°C | caccttctctgccttggactcac | 65°C | 407bp |
Exon 21 or C1 | |||||
C1 | UseNR1 general Fwd or | 59°C | gttttgcaaagcgccgcgtcca | 63°C | 717bp |
NR1 generic Fwd | 61°C | 710bp | |||
C1+ (ζ1 C1+) | tgtgtccctgtccatactcaag | 60°C | gtcgggctctgctctaccac | 62°C | 307bp |
Exon 22 or C2 | |||||
NR1 Exon-22 | catggcaggggtcttcatgctg | 63°C | gaacacagctgcagctggccct | 65°C | 318bp |
NR2 | |||||
NR2A | tatagagggtaaatgttgga | 50°C | agaaactgtgaggcatttct | 52°C | 322bp |
NR2B | actgtgacaacccacccttc | 58°C | cggaactggtccaggtagaa | 58°C | 400bp |
NR2C | tgtgtcaggccttagtgaca | 56°C | ccacactgtctccagcttct | 58°C | 402bp |
NR2D | aagaagatcgatggcgtctg | 56°C | ggatttcccaatggtgaagg | 56°C | 353bp |
All primers from GenoMechanix, Gainsville, Fl, USA.