Table II.
Twenty most conserved interactions
| Locus A | Locus B | Protein A | Protein B | Species | CV |
|---|---|---|---|---|---|
| At2g47640 | At4g30220 | Small nuclear ribonucleoprotein D2 | Small nuclear ribonucleoprotein F | 4 | 192 |
| At5g17310 | At5g17310 | UTP—Glc-1-P uridylyltransferase | UTP—Glc-1-P uridylyltransferase | 4 | 40 |
| At3g18524 | At4g02070 | DNA mismatch repair protein MSH2 | DNA mismatch repair protein MSH6-1 | 3 | 1,155 |
| At1g21690 | At5g27740 | Replication factor C 37 kD | Unknown expressed protein | 3 | 540 |
| At2g03870 | At5g48870 | Small nuclear ribonucleoprotein | Small nuclear ribonucleoprotein | 3 | 192 |
| At1g21690 | At1g77470 | Replication factor C 37 kD | Replication factor C 36 kD | 3 | 315 |
| At2g18510 | At4g21660 | Pre-mRNA splicing factor | Proline-rich spliceosome-associated (PSP) family protein | 3 | 210 |
| At4g20330 | At1g03280 | Transcription initiation factor-related contains weak similarity to transcription initiation factor IIE | Transcription initiation factor IIE (TFIIE) α-subunit family protein/general transcription factor TFIIE | 3 | 273 |
| At5g27740 | At5g22010 | Unknown expressed protein | AAA-type ATPase family protein/BRCT domain-containing protein | 3 | 198 |
| At5g67100 | At1g67630 | DNA-directed DNA polymerase α-catalytic subunit | DNA polymerase α-subunit B family | 3 | 150 |
| At1g63160 | At1g77470 | Replication factor C 40 kD | Replication factor C 36 kD | 3 | 135 |
| At1g63780 | At5g66540 | Brix domain-containing protein | Unknown expressed protein | 3 | 108 |
| At2g20140 | At2g20580 | 26S protease regulatory complex subunit 4 | 26S proteasome regulatory subunit S2 (RPN1) | 3 | 108 |
| At1g24180 | At5g50850 | Pyruvate dehydrogenase E1 component α-subunit | Pyruvate dehydrogenase E1 component β-subunit | 3 | 45 |
| At2g27020 | At1g47250 | 20S proteasome α-subunit G (PAG1; PRC8) | 20S proteasome α-subunit F2 (PAF2; PRC2B; PRS1) | 3 | 30 |
| At5g22330 | At5g67630 | TATA box-binding protein-interacting protein related | DNA helicase | 3 | 24 |
| At2g27020 | At5g35590 | 20S proteasome α-subunit G (PAG1; PRC8) | 20S proteasome α-subunit A1 (PAA1; PRC1) | 3 | 27 |
| At2g33370 | At2g44510 | 60S ribosomal protein L23 (RPL23B) | p21Cip1-binding protein related | 3 | 18 |
| At5g22370 | At4g21800 | ATP-binding family protein | ATP-binding family protein | 3 | 9 |
| At4g02460 | At4g09140 | DNA mismatch repair protein | DNA mismatch repair protein MLH1 | 2 | 720 |