Table 12.

The added value of re-ranking with weighted scores (proportion of improved servers)

	TM-score	MaxSub	GDT	Combined
MODCHECK	0.74	0.80	0.77	0.77
ModFOLD	0.74	0.74	0.71	0.74
ProQLG	0.71	0.69	0.71	0.71
PROQ*	0.71	0.74	0.69	0.69
ProQMX	0.57	0.63	0.63	0.63
ModSSEA	0.51	0.51	0.51	0.51
3D-Jury†	0.54	0.49	0.57	0.49
Random	0.03	0.03	0.06	0.06

Similar to Table 10, however the original server ranking is also considered and added to the score as an extra weighting ((6-r)/40, where r is the original server ranking between 1 and 5). The results achieved from a random re-ranking of models from each server (random assignment of scores between 0 and 1) are also shown for comparison. * The official predicted MQAP scores for these methods were downloaded from CASP7 website; all other MQAP methods were run in house during the CASP7 experiment. † MQAP methods which rely on the comparison of multiple models or additional information from multiple servers; all other methods are capable of producing a single score for a single model.