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. 2007 Nov;9(5):618–623. doi: 10.2353/jmoldx.2007.070027

Table 2.

Extension Primer Sequences and Concentrations

Primer name and variant changes Primer sequence Concentration (μM)
Splice site mutation 5′-CCTATCCTTGTCGGT-3′ 0.4
 c.253-2A>G
 IVS 2-2A>G
Exon5 c.404C>T p.S135L 5′-AGGTCATGTGCTTCCACCCCTGGT-3′ 0.2
Exon5 c.413C>T* p.T138M 5′-GGATCTCAGGGACCGACATGAGTGGCAGC-3′ 0.08
Exon6 c.563A>G p.Q188R 5′-ATGATGGGCTGTTCTAACCCCCACCCCCACTGCC-3′ 0.1
Exon7 c.584T>C p.L195P 5′-CTGCTTTTGCCCCTTGACAGGTATGGGCCAGCAGTTTCC-3′ 0.36
Exon7 c.626A>G*p.Y209C 5′-GGCGGCTGTACTCCATTAGCAGGGGCTCTCCATGCTGACTCTTA-3′ 0.4
Exon7 c.652C>T*p.L218L 5′-TTGGCTCTCTCCCACCTTCCTGAGTAGCTCCTGGCGGCTGTACTCCATTA-3′ 0.16
Exon9 c.285G>T p.K285N 5′-GAGTCAGGCTCTGATTCCAGATCTAGCCTCCATCATGAAGAAGCTCTTGACCAA-3′ 0.12
Exon10 c.940A>G p.N314D 5′-CACTGTCTCTCTTCTTTCTGTCAGGGGCTCCCACAGGATCAGAGGCTGGGGCCAACTGG-3′ 0.4

Exon number, nucleotide, and amino acid changes are given with primer sequences and concentrations of nine oligodeoxyribonucleotides. 

*

Primers in italics interrogate the antisense strand. 

Primers that are 50-bp long were purified by high-performance liquid chromatography before use.