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Prediction under the single-sequence condition
| Test | QÌ | QH | QE | QC | SOV | SOVH | SOVE | SOVC |
| 5-fold cross-validation | 68.3 | 65.9 | 56.4 | 74.8 | 63.9 | 63.8 | 59.8 | 65.8 |
| Non-common (Block-HMM) | 68.6 | 67.6 | 58.0 | 74.1 | 64.1 | 64.9 | 61.2 | 65.4 |
| Non-common (PSIPRED) | 67.3 | 65.8 | 58.9 | 70.5 | 63.6 | 64.2 | 60.7 | 63.1 |
| Common (Block-HMM) | 69.0 | 66.1 | 56.6 | 76.3 | 63.6 | 63.4 | 59.8 | 66.7 |
| Common (PSIPRED) | 67.6 | 63.4 | 56.0 | 73.8 | 63.1 | 62.8 | 58.2 | 63.8 |
