Table 1.

Mouse miRNAs with significant CE scores in a brain-enriched gene group.

seed	CE score	matched miRNA(s)	brain/neuronal expression citation
AAGCCAU	4.68	mmu-miR-135a/mmu-miR-135b	(Sempere et al., 2004)
UGCCUUA	4.42	mmu-miR-124a	(Lagos-Quintana et al., 2002)
AAGCACA	4.13	mmu-miR-218	(Sempere et al., 2004)
UGCAAAC	4.10	mmu-miR-452	(Dostie et al., 2003)
CACUGCC	3.79	mmu-miR-34a/c mmu-miR-449	(Kim et al., 2004)
AGCACAA	3.74	mmu-miR-218	(Sempere et al., 2004)
CUGUAGA	3.36	mmu-miR-139	(Sempere et al., 2004)
ACUGCCU	3.28	mmu-miR-34b/c	(Kim et al., 2004)
ACUGCCA	3.22	mmu-miR-34a mmu-miR-449	(Kim et al., 2004)
CCUCUGC	3.21	mmu-miR-298
AUUCUUU	2.87	mmu-miR-186
GUAUGUA	2.78	mmu-miR-466
AGCAAUA	2.76	mmu-miR-137
UGCAGUA	2.74	mmu-miR-217	(Dostie et al., 2003)
CCCAGAG	2.71	mmu-miR-326	(Kim et al., 2004)
AGACGGA	2.69	mmu-miR-340	(Kim et al., 2004)
GGAGAAG	2.66	mmu-miR-207	(Dostie et al., 2003)
ACCAAAG	2.66	mmu-miR-9	(Lagos-Quintana et al., 2002)
ACGCACA	2.62	mmu-miR-210
GCAGACA	2.62	mmu-miR-346	(Kim et al., 2004)
CUAGGAA	2.60	mmu-miR-384
CCGUGUU	2.57	mmu-miR-411
UCUGAUC	2.52	mmu-miR-383
GGACCAA	2.49	mmu-miR-133a/b	(Mortazavi et al., 2006)
AGUCAUA	2.47	mmu-miR-468
GUUCUCA	2.42	mmu-miR-146
UAACCUA	2.40	mmu-miR-154
AUGGAGU	2.38	mmu-miR-136	(Miska et al., 2004)
GCAAUAA	2.37	mmu-miR-137

miRNAs known to be expressed in the brain are highlighted in blue.