Table 1.
FepA mutant | Name | Ferric enterobactin
|
Colicin B
|
Colicin D
|
|||||
---|---|---|---|---|---|---|---|---|---|
Binding* and transport†
|
Killing,‡ ++ | Binding§Kd | Killing,‡ ++ | Binding§Kd | |||||
Kd | Km | Vmax | Nutrition | ||||||
++ | FepA | 22 | 155 | 85 | 20 | 100 | 145 | 100 | 169 |
R283A | A | 23 | 253 | 97 | 20 | 100 | 210 | 100 | 184 |
R286A | B | 19 | 571 | 98 | 22 | 100 | 140 | 20 | 188 |
R313A | C | 26 | 522 | 109 | 20 | 100 | 190 | 100 | 187 |
R316A | D | 27 | 309 | 97 | 21 | 20 | 180 | 4 | 173 |
R274A | E | 21 | 152 | 79 | 20 | 100 | 108 | 100 | 177 |
R283/286A | AB | 28 | 524 | 70 | 21 | 100 | 220 | 80 | 133 |
R283/313A | AC | 25 | 186 | 73 | 20 | 100 | 290 | 100 | 174 |
R283/316A | AD | 27 | 161 | 64 | 21 | 10 | 250 | 2 | 312 |
R274/283A | AE | 20 | 287 | 96 | 20 | 100 | 142 | 100 | 227 |
R286/313A | BC | 21 | 335 | 87 | 21 | 100 | 226 | 20 | 192 |
R274/286A | BE | 29 | 108 | 74 | 20 | 100 | 148 | 100 | 152 |
R313/316A | CD | 23 | 268 | 101 | 21 | 20 | 170 | 80 | 303 |
R274/313A | EC | 32 | 132 | 105 | 20 | 100 | 510 | 100 | 215 |
R274/316A | DE | 26 | 145 | 76 | 20 | 20 | 142 | 2 | 232 |
R/283/286/313A | ABC | 12 | 1676 | 77 | 21 | 25 | 120 | 10 | 215 |
R283/313/316A | ACD | 44 | 316 | 93 | 20 | 100 | 200 | 12.5 | 408 |
R274/R313/R316A | ECD | 22 | 354 | 150 | 20 | 10 | 462 | 2.5 | 275 |
R286/316A | BD | 701 | 2,745 | 24 | 17 | 2 | 220 | 0.2 | 517 |
R283/286/316A | ABD | 1,586 | 2,834 | 18 | 15 | 5 | 210 | 2 | 865 |
R286/313/316A | BCD | 1,708 | >10,000 | 37 | 14 | 2 | 280 | 1 | 1,065 |
R233/286/313/316A | ABCD | >5,000 | >10,000 | 0 | 9 | 0.1 | 145 | 0.2 | 1,699 |
Kd values (nM) were determined from the concentration-dependence of 59Fe-enterobactin binding; the mean values from four independent experiments were plotted with grafit (Elsevier), using the “Bound versus Total” equation. The mean SE of the fitted curves that produced the Kd values was 32%, with a SD of 8.6%.
The Km (nM) and Vmax (pmol/min per 109 cells) of transport were determined from 59Fe-enterobactin uptake assays (26); mean values from two independent experiments were plotted with grafit to yield the kinetic parameters. The mean SE of the fitted curves that produced the Km values was 46%, with a SD of 17%. The diameters of growth halos in siderophore nutrition assays are reported in millimeters. The tabulated values represent a single experiment, but little variation was observed among several trials.
Bacteria were plated in top agar, and serial dilutions of colicin B or D were spotted onto the plates to determine the colicin titer on the various mutants, relative to wild-type FepA. The tabulated values represent a single experiment, but little variation was observed among several independent trials.
Combined data from two independent binding experiments were fit with grafit, using the Bound versus Total equation. For colicin B, the mean SE of the fitted curves that produced the Kd values (nM) was 30%, with a SD of 6%, whereas for colicin D, the mean SE was 21%, with a SD of 7.5%.