Table 2.
Duplicate gene homeology/paralogy between BAC pairs
| BAC homeologs | Putative function | # of exons | Coding lengtha | Nucleotide identity | Protein identity | Protein similarity | Ks | Ka | Date (Mya) |
| gmw1-74i13 gmw1-52d3 | b | b | b | 89.8 | 88.0 | 90.7 | 0.1490 | 0.0335 | 12.2 |
| gmw1-105h23 gmw1-15k6 | d | d | d | 90.7 | 88.9 | 90.4 | 0.1061 | 0.0326 | 8.70 |
| UMb001-24d13 | DNA binding | 6 | 1338 | 92.7 | 88.7 | 92.2 | 0.1177 | 0.0468 | 9.65 |
| UMb001-5f5 | DNA binding | 7 | 1473 | ||||||
| UMb001-24d13 | Gamma response I | 9 | 987 | 95.9 | 95.7 | 96.3 | 0.1405 | 0.0152 | 11.52 |
| UMb001-5f5 | Gamma response I | 9 | 984 | ||||||
| UMb001-24d13 | Selenium binding | 4 | 1881 | 56.3 | 54.6 | 56.4 | 0.1709 | 0.0575 | 14.01 |
| UMb001-5f5 | Selenium binding | 5 | 585 | ||||||
| gmw1-103e11 | A. thaliana-like NAP | 7 | 510 | 96.4 | 95.8 | 97.2 | 0.0933 | 0.0188 | 7.65 |
| gmw1-5g16 | A. thaliana-like NAP | 7 | 1002 | ||||||
| gmw1-103e11 | Beta-fructofuranosidase | 6 | 1944 | 94.4 | 92.7 | 94.1 | 0.0716 | 0.0276 | 5.87 |
| gmw1-5g16 | Beta-fructofuranosidase | 6 | 1956 | ||||||
| gmw1-103e11 | Galactinol synthase | 4 | 732 | 90.5 | 93.5 | 94.7 | 0.3208 | 0.0316 | 26.30 |
| gmw1-5g16 | Galactinol synthase | 3/4 | 669/987 | ||||||
| gmw1-103e11 | RAD-like protein | 6/7 | 564/900 | 96.9 | 92.9 | 97.6 | 0.0432 | 0.0442 | 3.54 |
| gmw1-5g16 | RAD-like protein | 5 | 240 | ||||||
| gmw2-133d1 | GTPase | 14 | 3183 | 96.9 | 98.1 | 99.1 | 0.1055 | 0.0084 | 8.65 |
| gmw1-93l19 | GTPase | 16 | 3480 | ||||||
| gmw2-133d1 | Cellulose synthase | 9 | 2211 | 67.6 | 65.1 | 67.0 | 0.1109 | 0.0438 | 9.09 |
| gmw1-93l19 | Cellulose synthase | 5 | 924 | ||||||
| gmw2-133d1 | Chain A protein | 1 | 1608 | 81.1 | 76.4 | 80.1 | 0.1856 | 0.077 | 15.21 |
| gmw1-93l19 | Chain A protein | 1 | 1452 | ||||||
| gmw1-13o17 | Raffinose synthase | 5 | 2277 | 66.4 | 71.5 | 81.5 | 2.5495 | 0.2051 | 208.98 |
| gmw1-8g7 | Raffinose synthase | 6 | 2190 | ||||||
| gmw1-57d24 | Phospholipase C | 8 | 1308 | 80.5 | 78.7 | 87.6 | 0.5457 | 0.114 | 44.73 |
| gmw1-58k3 | Phospholipase C | 8 | 1299 | ||||||
| gmw1-57d24 | COMT | 5 | 747 | 79.7 | 79.0 | 88.3 | 0.6442 | 0.1204 | 52.80 |
| gmw1-58k3 | COMT | 4/5 | 615/354 | ||||||
| gmw1-58k3 | COMT | 4/5 | 615/354 | 73.6 | 76.3 | 87.7 | 1.7076 | 0.1667 | 139.97 |
| gmw1-27d20 | COMT | 5 | 744 | ||||||
| gmw1-58k3 | Otubain | 6 | 1992 | 53.7 | 42.5 | 53.3 | 4.024 | 0.3023 | 329.84 |
| gmw1-27d20 | Otubain | 7 | 1860 | ||||||
| gmw1-57d24 | CBS | 6/8 | 399/687 | 74.9 | 73.7 | 89.5 | 2.0095 | 0.1562 | 164.71 |
| gmw1-27d20 | CBS | 8 | 678 | ||||||
| gmw1-57d24 | COMT | 5 | 747 | 74.1 | 81.6 | 91.0 | 1.5875 | 0.1196 | 130.12 |
| gmw1-27d20 | COMT | 5 | 744 | ||||||
| Average | 86.6 | 85.4 | 88.8 | 0.4239 | 0.0577 | 34.75 | |||
| Recalculated average 1d | 89.8 | 88.2 | 90.1 | 0.1179 | 0.0341 | 9.665 | |||
| Recalculated average 2e | 71.8 | 71.9 | 82.7 | 1.8668 | 0.1691 | 153 | |||
a Coding length in base pairs based upon CDS (from start to stop not including introns).
b The values for homeologs between gmw1-74i13 and gmw1-52d3 are previously reported (Schlueter et al. 2006). Identity, similarity, Ks, Ka and Dates shown are average across BACs.
c The values for homeologs between gmw1-105h23 and gmw1-15k6 are previously reported (Schlueter et al. 2007). Identity, similarity, Ks, Ka and Dates shown are average across BACs.
d Recalculated average not including the highly divergent homeologs from gmw1-13o17, gmw1-8g7, gmw1-57d24, gmw1-58k3 and gmw1-27d20.
e Recalculated average for just the highly divergent homeologs from gmw1-13o17, gmw1-8g7, gmw1-57d24, gmw1-58k3 and gmw1-27d24.