Table 2.
Residues related to intermolecular contacts
| VSV N | RABV N | ||||
|---|---|---|---|---|---|
| Interaction | Residue 1 | Residue 2 | Interaction | Residue 1 | Residue 2 |
| Contact I | Contact I | ||||
| H bond | O= of Ser2 | sidechain of Glu243 | Hydrophobic | sidechain of Phe8 | surface pocket |
| Salt bridge | sidechain of Arg7 | sidechain of Asp256 | H bond | sidechain of Asn12 | sidechain of Arg270 |
| H bond | sidechain of Lys17 | O= of Met262 | H bond | O= of Glu20 | sidechain of Arg254 |
| Hydrophobic | sidechain of Glu20 | sidechain of Phe273 | |||
| Contact II | Contact II | ||||
| H bond | sidechain of Ser340 | sidechain of Lys388 | H bond | -NH- of Gly353 | O= of Gly414 |
| H bond | O= of Ala342 | sidechain of Arg387 | H bond | -NH- of Thr354 | sidechain of Glu337 |
| H bond | -NH- of Asp343 | sidechain of Ser326 | Hydrophobic | sidechain of Phe355 | surface pocket |
| Hydrophobic | sidechain of leu344 | surface pocket | Hydrophobic | sidechain of Arg357 | surface pocket |
| H bond | -NH- of Ala345 | O= of Leu250 | Hydrophobic | sidechain of Phe359 | surface pocket |
| Hydrophobic | sidechain of Phe348 | surface pocket | |||
| Hydrophobic | sidechain of Lys354 | sidechain of Leu379 | |||
| Contact III | Contact III | ||||
| H bond | -NH- of Lys6 | O= of Cys349 | H bond | -NH- of Lys9 | O= of Phe360 |
| H bond | O= of Lys6 | -NH- of Cys349 | H bond | O= of Lys9 | -NH- of Phe360 |
| H bond | -NH- of Ile8 | O= of Gln347 | Salt bridge | sidechain of Lys9 | sidechain of Glu363 |
| Hydrophobic | sidechain of Val10 | sidechain of Phe359 | |||