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. 2007 Nov 28;2(11):e1246. doi: 10.1371/journal.pone.0001246

Table 2. Frequency of defined trinucleotides of decoy 3′ splice sites in candidate In100 elements (numbers observed and expected for introns/exons).

CAG AAG GAG TAG Total
Intronic Exonic Intronic Exonic Intronic Exonic Intronic Exonic Intronic Exonic
Obs No. 4277 65 4643 95 3814 57 5126 80 17860 297
Exp No. 3572 73 5001 77 3750 74 5537 73 17860 297
Excess (O-E/E)×100 19.7 −11 −7.2 23 1.7 −23 −7.4 10
(O-E)2/E 139.1 0.877 25.6 4.21 1.1 3.9 30.5 0.67 196.3 9.7

χ2 = 196.3 for df = 3 indicates a probability that is very low (P = 4.2×10−42), thus there is a significant excess (∼20%) of the In100 element candidate as defined by CAG at the last three positions of the decoy 3′ splice site inside the In100-like elements located in introns. The opposite pattern is observed for CAG inside the In100-like elements located in exons: depletion of 11% (X2 = 9.7 for df = 3; P = 0.021). The expected numbers were calculated separately by the nucleotide composition of intronic regions: 0.28 for A, 0.31 for T, 0.20 for C and 0.21 for G; and of exonic regions: 0.258 for A, 0.246 for T, 0.246 for C and 0.25 for G [43].