Table 2. Frequency of defined trinucleotides of decoy 3′ splice sites in candidate In100 elements (numbers observed and expected for introns/exons).
CAG | AAG | GAG | TAG | Total | ||||||
Intronic | Exonic | Intronic | Exonic | Intronic | Exonic | Intronic | Exonic | Intronic | Exonic | |
Obs No. | 4277 | 65 | 4643 | 95 | 3814 | 57 | 5126 | 80 | 17860 | 297 |
Exp No. | 3572 | 73 | 5001 | 77 | 3750 | 74 | 5537 | 73 | 17860 | 297 |
Excess (O-E/E)×100 | 19.7 | −11 | −7.2 | 23 | 1.7 | −23 | −7.4 | 10 | ||
(O-E)2/E | 139.1 | 0.877 | 25.6 | 4.21 | 1.1 | 3.9 | 30.5 | 0.67 | 196.3 | 9.7 |
χ2 = 196.3 for df = 3 indicates a probability that is very low (P = 4.2×10−42), thus there is a significant excess (∼20%) of the In100 element candidate as defined by CAG at the last three positions of the decoy 3′ splice site inside the In100-like elements located in introns. The opposite pattern is observed for CAG inside the In100-like elements located in exons: depletion of 11% (X2 = 9.7 for df = 3; P = 0.021). The expected numbers were calculated separately by the nucleotide composition of intronic regions: 0.28 for A, 0.31 for T, 0.20 for C and 0.21 for G; and of exonic regions: 0.258 for A, 0.246 for T, 0.246 for C and 0.25 for G [43].