Table 2.
Helicases | ATPase | Helicase | DNA binding | ATP binding | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Vm | KM | kcat | kcat/KM | A1 | kobs,1 | A2 | kobs,2 | ssDNA | dsDNA | [ATP]/[Protein] | |
µM·min−1 | µM | s−1 | s−1·mM−1 | % | s−1 | % | s−1 | nM | nM | ||
BLM642–1290 | 164.2 ± 9.3 | 80.7 ± 2.0 | 13.7 | 169.5 | 62.8 ± 0.6 | 0.52 ± 0.01 | 23.2 ± 0.6 | 0.05 ± 0.01 | 7.2 ± 0.4 | 9.8 ± 1.1 | 1.02 ± 0.23 |
Q672R | 127.6 ± 11.4 | 1755 ± 127 | 10.6 | 6.0 | 16.2 ± 0.1 | 0.03 ± 0.01 | 10.9 ± 0.8 | 15.3 ± 1.9 | 0.22 ± 0.04 | ||
I841T | 39.8 ± 7.4 | NDa | 3.3 | ND | 12.1 ± 1.2 | 14.8 ± 1.5 | 1.01 ± 0.15 | ||||
C878R | 196.5 ± 11.5 | 3460 ± 693 | 16.3 | 4.7 | 30.2 ± 0.1b | 0.01 ± 0.01 | 168 ± 10 | 327 ± 27 | 0.97 ± 0.23 | ||
G891E | 4.6 ± 0.9 | ND | 0.38 | ND | 352 ± 12 | 349 ± 12 | 0.98 ± 0.14 | ||||
C901Y | 5.8 ± 0.8 | ND | 0.48 | ND | 475 ± 25 | 122 ± 18 | 0.89 ± 0.27 |
aND: cannot be determined precisely. The ATP saturation curves of the BLM642–1290 and its corresponding variant were fitted by Michaelis–Menten, Lineweaver–Burk and Eadie–Hofstee equations. The ATP saturation curves of BLM642–1290, Q672R and C878R were fitted well by the three equations, yielding similar Vm and Km values, whatever the fitting procedure. In contrast, for poorly active mutants, I841, G891E and C901Y, the Lineweaver–Burk and Eadie–Hofstee plots were not linear. For these mutants, only the Vm values were precisely recovered by fitting with the Michaelis–Menten equation.
bData obtained with 150 nM protein.