Table 1.
Purpose | Primer | Cloning sites |
---|---|---|
Amplimers for UGT1A1 promoter repeat analysis | 5′-GTCACGTGACACAGTCAAAC-3′ | |
5′-TTTGCTCCTGCCAGAGGTT-3′ | ||
PCR primers for ABI automated sequencing | 5′-GCCAGTTCAACTGTTGTTGCC-3′ | |
5′-CCACTGGGATCAACAGTATCT-3′ | ||
Nested primer for ABI automated sequencing | 5′-AGAAACCTAATAAAGCTCCACC-3′ | |
PCR primers for ABI fluorescent fragment size | 5′-GCTACCTTTGTGGACTGACAGC-3′ | |
analysis | HEX-5′-GTACAACGAGGCGTCAGGTGC-3′ | |
To amplify 227- to 233-bp promoter fragment for | 5′-GTACTTGCTGTGGTACCTCCAGAAT-3′ | KpnI |
functional studies | 5′-GGCGCCTTTGCTCCTGCTCGAGGTTC-3′ | XhoI |
To amplify 259- to 265-bp promoter fragment for | 5′-CGATAGGTACCTGGAAGTACTTGCTGTGGTTACTCC-3′ | KpnI |
functional studies | 5′-ATCGCAGATCTGGCGCCTTTGCTCCTGCCAGAG-3′ | BglII |
pGL3 vector primers for sequencing | 5′-CTAGCAAAATAGGCTGTCCC-3′ | |
5′-CTTTATGTTTTTGGCGTCTTCCA-3′ |
Italicized, positions mismatched to create restriction endonuclease digestion sites for cloning; bold, overhangs with restriction endonuclease digestion sites for cloning. ABI, Applied Biosystems.