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. 2007 Sep 18;35(19):6424–6438. doi: 10.1093/nar/gkm664

Table 3.

Energies (−E in kcal mol−1) obtained from semi-empirical calculations (CC = Counterpoise Correction)

Basis set level/ Base pair MP2 MP2
6-31G* 6-31+G** MP2 MP2
6-31G* 6-31+G**
(CC) (CC)
Point energy calculation based on crystallographic data
F104:G209 8.3 6.9 4.4 4.8
F204:G109 9.2 7.7 5.1 5.6
F304:G409 7.2 6.4 4.2 4.7
F404:G309 8.4 7.1 4.7 5.1
F4:A21 5.4 4.9 2.6 2.8
F16: A9 5.6 4.9 2.6 2.9
average F:G 8.3 7 4.6 5.1
average F:A 5.5 4.9 2.6 2.9
Energy calculation from base–pair geometry optimization
T:A 18.2 16.5 12.3 12.7
F:A 7.6 7.2 4 4.3
T:G 19.6 19.3 14.1 15.5
F:G 11.5 8.4 6.4 7