Table 1.
Site Relative to Cc or Pp | DNA | RNA | Codon Position | Change aa | Conserved in |
cox1 330 | A | G | 1st | I – V | Pp and Cc |
cox1 351 | T | C | 1st | F – L | Pp and Cc |
cox1 469 | C | U | 2nd | T – I | Unique1 |
cox1 481 | C | U | 2nd | S – F | Pp and Cc |
cox1 495 | T | C | 1st | F – L | Pp and Cc |
cox1 621 | A | G | 1st | I – V | Pp and Cc |
cox1 691 | A | G | 2nd | Y – C | Pp |
cox1 924 | A | G | 1st | I – V | Pp and Cc |
cox1 952 | T | C | 2nd | L – S | Pp and Cc |
cox1 1174 | A | G | 2nd | K – R | Pp and Cc |
cox1 1180 | A | G | 2nd | N – S | Pp and Cc |
cob 782 | T | C | 2nd | V – A | Pp, Cc, Pmic, Km, Pmin, Ps, At |
cob 788 | G | C | 2nd | G – A | Pp, Pmic, Km, Pmin, Ps, At |
cob 861 | C | U | 3rd | Silent | Pmic, Pmin, Km |
cob 883 | A | G | 1st | I – V | Pmic, Pmin, K.m. |
cob 904 | A | G | 1st | T – A | Pmic and Pmin |
cob 1064 | G | C | 2nd | G – A | Unique2 |
cob 1081 | C | U | 1st | H – V | Unique2 |
Column 1 is the site numbered according to genes from Crypthecodinium cohnii (cox1) or Pfiesteria piscicida (cob). Column 2 and 3 are pre-edited and post-edited states in D. baltica. Column 4 is the position within the codon. Column 5 is the amino acid change. Column 6 lists other dinoflagellates where the same editing is found. Abbreviations: Pp, Pfiesteria piscicida; Cc, Crypthecodinium cohnii; Pmic, Prorocentrum micans; Prorocentrum minimum; Km, Karlodinium micrum; Ps, Pfiesteria shumwyae; At, Alexandrium tamarense.
1 This change is absent in Pp and Cc.
2 These changes are absent in Pp and not sampled from Cc.