Table 2.
Nucleotide sequences for BSMV/MStV chimeric RNA cDNA clones
| Sequence type* | Freq† | Partial nucleotide sequence‡ | |
|---|---|---|---|
| MStV RNA4 | 4 | acacaaagtcCAGGGCATTTTACAATATTCTATTCAATCCACTATCATCGAAGGTACAAGATATG... | |
| αBSMV | 4 | gtatgtaagt | TGCC... |
| BSMVα/MStVa | 15 | gtatgtaagt | TGC--------------CACAAAGTCCA... |
| b | 3 | gtatgtaagt | -----------------------------GGCATTTTAC... |
| c | 2 | gtatgtaagt | TG---------------CACAAAGTCCA... |
| d | 2 | gtatgtaagt | T------ACCG-----ACACAAAGTCCA... |
| e | 1 | gtatgtaagt | TGCC------------ACACAAAGTCCA... |
| f | 1 | gtatgtaagt | -------------------------CCA... |
| g | 1 | gtatgtaagt | ----------------------------------------------------------------------TACAAGATATG... |
| h | 1 | gtatgtaagt | --------C-------ACACAAAGTCCA... |
| i | 1 | gtatgtaagt | TGC----AC-------ACACAAAGTCCA... |
| βBSMV | 2 | gtaaaagaaa | AGGAACA... |
| BSMVβ/MStVj | 16 | gtaaaagaaa | AGGA------------ACACAAAGTCCA... |
| k | 2 | gtaaaagaaa | ----------------ACACAAAGTCCA... |
| l | 2 | gtaaaagaaa | -------------C--ACACAAAGTCCA... |
| m | 2 | gtaaaagaaa | A----------CAC--ACACAAAGTCCA... |
| n | 2 | gtaaaagaaa | A------------C--ACACAAAGTCCA... |
| o | 1 | gtaaaagaaa | ---------CACAC--ACACAAAGTCCA... |
| p | 1 | gtaaaagaaa | AGGA---------------CAAAGTCCA... |
| γBSMV | 3 | gtatagcttg | AGCATTA... |
| BSMVγ/MStVq | 19 | gtatagcttg | AG---------------CACAAAGTCCA... |
| r | 5 | gtatagcttg | ----------------ACACAAAGTCCA... |
| s | 1 | gtatagcttg | AG-----------------CAAAGTCCA... |
| t | 1 | gtatagcttg | A---------------ACACAAAGTCCA... |
*
Indicates the type of RNA that was used to generate RT-PCR clones and used for nucleotide sequence analysis.
†
Indicates the number of clones of the corresponding type (i.e., MStV RNA 4) which were analyzed.
‡
Shows the respective nucleotide sequence (as DNA). Nucleotides shown in lower case letters are attributed to the PCR primers. Dashes and spaces were added to aid in alignment of nucleotide sequences. Boldface and underlined letters indicate that the corresponding nucleotide could originate from either MStV or BSMV nucleotide sequences. Boldface and italicized letters indicate nucleotides that cannot be classified definitively as originating from MStV or BSMV.