Table 2.
Regions of the bovine SILV mRNA tested for expression by RT-PCR in skin and non-pigmented body tissues
Primer combination | Region | Expected fragment [bp] | Observed fragment [bp] | ||
Eumelaneic skin | Phaeomelaneic skin | Non-pigmented tissues | |||
5UTRF1 – E11R2 | exon 1 – exon 11 | 2039 | 2039, 1102 and multiple further fragments | n.a. | n.a. |
E1F3 – E7R1 | exon 1 – exon 7 | 1430 | 1430 and further multiple bands | n.a. | n.a. |
E1F3 – E3R1 | exon 1 – exon 3 | 294 | 294 | 294 | n.a. |
E3F1 – E5R1 | exon 3 – exon 5 | 377 | 377 | 377 | n.a. |
E5F1 – E7R1 | exon 5 – exon 7 | 856 | 856, 700, 331, 175 | 856, 700, 331, 175 | 856, 700, 331, 175 (pg, tg, ki, ag, li, lu, he, br, ru, if, sf, sf, mg, fu, co, je, mu) |
E7F1 – E11R2 | exon 7 – exon 11 | 687 | 687; 593 | 687; 593 | n.a. |
E6F2 – E7R1 | exon 6 – exon 7 | 479 | 479, 324 | 479, 324 | n.a. |
E5F1 – E6R2 | exon 5 – exon 6 | 456 | 456 | 456 | n.a. |
E9F1 – E11R2 | exon 9 – exon 11 | 404 | 404 | 404 | 404 (pg, tg, ki, ag, li, lu, he, br, ru, if, sf, sf, mg, fu, co, je, mu) |
E10F1 – E11R2 | exon 10 – exon 11 | 274 | 274 | 274 | n.a. |
E1F3 – E5R1 | exon 1 – exon 5 | 588 | n.a. | n.a. | 588 (pg, tg, ki, ag, li, lu, he, br, ru, if, sf, sf, mg, fu, co, je, mu) |
pg: pituitary gland, tg: thyroid gland, ki: kidney, ag: adrenal gland, li: liver, lu: lung, he: heart, br: brain, ru: rumen, if: intestinal fat, sf: subcutaneous fat, pf: perirenal fat, mg: mammary gland, du: duodenum, co: colon, je: jejunum, mu: skeletal muscle. n.a.: not analyzed