Table 3.
Correlation between real-time RT-PCR and DNA microarray data
| Gene symbol | Gene name | Mouse | Human | GenBank # | r | p | KM |
| amh | anti-müllerian hormone | Amh | AMH | BX65284 | 13 | ||
| tcav0004c.11 | 0.903 | *** | |||||
| star | steroidogenic acute regulatory protein | Star | STAR | A047032 | 13 | ||
| tcad0007a.07 | 0.546 | *** | |||||
| tcad0008a.24 | 0.603 | *** | |||||
| dmrt1 | doublesex- and mab-3-related transcription factor 1 | Dmrt1 | DMRT1 | AF209095 | 9 | ||
| tcad0009a.11 | 0.813 | *** | |||||
| nr5a1b | nuclear receptor subfamily 5, group A, member 1 b | Nr5a1 | NR5A1 | AY879314 | 11 | ||
| tcad0006a.10 | 0.439 | *** | |||||
| apoeb | apolipoprotein E b | Apoe | APOE | ||||
| AJ132620 | 6 | ||||||
| tcac0005c.15 | 0.634 | *** | |||||
| tcad0007a.20 | 0.695 | *** | |||||
| bzrp | benzodiazepine receptor, peripheral | Bzrp | BZRP | AY029216 | 9 | ||
| tcab0001c.16 | 0.181 | NS | |||||
| bmp7 | bone morphogenetic protein 7 | Bmp7 | BMP7 | BX301016 | 3 | ||
| tcav0001c.14 | 0.557 | *** | |||||
| gdf9 | growth differentiation factor 9 | Gdf9 | GDF9 | BX79301 | 3 | ||
| tcad0007a.06 | 0.660 | *** | |||||
| inha | inhibin alpha | Inha | INHA | AB044566 | 6 | ||
| tcav0001c.05 | 0.885 | *** | |||||
| tcav0005c.12 | 0.907 | *** | |||||
| tcac0005c.12 | 0.780 | *** | |||||
| tcad0005a.05 | 0.805 | *** | |||||
| gcl | germ cell-less homolog (Drosophila) | Gcl | GCL | BX081118 | 8 | ||
| tcad0009a.22 | 0.417 | *** | |||||
| vldr | very low density lipoprotein receptor | Vldr | VLDR | AJ003117 | 3 | ||
| tcad0005a.13 | 0.823 | *** | |||||
| hsp90b | heat shock protein 90 beta | Hspcb | HSPCB | BX072707 | 2 | ||
| tcac0006c.15 | 0.628 | *** | |||||
| gapdh | glyceraldehyde-3-phosphate dehydrogenase | Gapdh | GAPDH | AF027130 | 1 | ||
| tcab0001c.21 | 0.427 | *** | |||||
| tcac0004c.07 | 0.463 | *** | |||||
| tcac0006c.01 | 0.436 | *** | |||||
| tcad0002a.13 | 0.314 | * | |||||
| tfa | transferrin | Trf | TF | D89083 | 10 | ||
| tcad0003a.22 | 0.053 | NS | |||||
| aldob | aldolase b, fructose-bisphosphate | Aldob | ALDOB | BX081681 | 3 | ||
| tcad0001a.21 | 0.790 | *** | |||||
| m agoh | mago-nashi homolog, proliferation-associated | Magoh | MAGOH | BX080533 | 4 | ||
| tcab0001c.07 | 0.812 | *** | |||||
| timp2 | tissue inhibitor of metalloproteinase 2 | Timp2 | TIMP2 | CA360907 | 9 | ||
| tcac0004c.16 | 0.082 | NS | |||||
| tcad0001a.20 | 0.167 | NS | |||||
| tcad0005a.08 | 0.031 | NS | |||||
| tcad0006a.16 | 0.013 | NS | |||||
| tcad0007a.18 | 0.060 | NS | |||||
| tra2a | transform er-2 alpha | Tra2a | TRA2A | BX074515 | 5 | ||
| tcad0008a.18 | 0.366 | ** |
Each gene is depicted by its gene symbol and gene name (according to the zebrafish nomenclature). Symbols for mouse and human homolog genes are also given with their corresponding GenBank accession number. K-means cluster number (KM) is given for each gene with the correlation coefficient r to compare correlation between expression profiles measured by real-time RT-PCR (GenBank # in bold) and microarrays (clone numbers). Significant correlations were determined using the Pearson's correlation coefficient test (**: p < 0.01; ***: p < 0.05; NS: Not Significant).