Table 2.
Hydrogen bonds between L1 and 7D11-Fab.
From L1 | To HC | Distance | ||||||
---|---|---|---|---|---|---|---|---|
Residue name | Atom | Loop | Residue name | Atom | CDR | |||
Lys | 33 | N | 1 | Asp | 102 | O | 3 | 2.7Å |
Asp | 35 | Oδ1 | 1 | Tyr | 50 | OH | 2 | 2.9Å |
Asp | 35 | Oδ1 | 1 | Trp | 33 | Nε1 | 1 | 3.0Å |
Asp | 35 | Oδ2 | 1 | Trp | 33 | Nε1 | 1 | 3.3Å |
Asp | 35 | Oδ2 | 1 | Asn | 52 | N& δ2 | 2 | 3.1Å |
Ala | 59 | O | 2 | Asn | 52 | N δ2 | 2 | 2.9Å |
Asp | 60 | N | 2 | Thr | 30 | O | 1 | 3.6Å |
Asp | 60 | Oδ1 | 2 | Ser | 54 | Oγ | 2 | 3.4Å |
Asp | 60 | Oδ2 | 2 | Arg | 31 | Nε | 1 | 3.4Å |
Asp | 60 | Oδ2 | 2 | Thr | 30 | Oγ1 | 1 | 2.9Å |
Listed are the atoms from L1 and their corresponding loops, the hydrogen bond partner in the heavy chain (HC) and their corresponding complementarity-determining region (CDR) loop, and the distances between them.