Table 3.
Van der Waals interactions between L1 and the heavy chain of 7D11-Fab.
| L1 | Loop | HC | CDR |
|---|---|---|---|
| Asn 27 | 1 | Arg 31 | 1 |
| Gln 31 | 1 | Asp 102 | 3 |
| Gln 31 | 1 | Tyr 104 | 3 |
| Thr 32 | 1 | Asp 102 | 3 |
| Thr 32 | 1 | Trp 33 | 1 |
| Thr 32 | 1 | Tyr 104 | 3 |
| Lys 33 | 1 | Asp 102 | 3 |
| Lys 33 | 1 | Trp 33 | 1 |
| Lys 33 | 1 | Tyr 104 | 3 |
| Asp 35 | 1 | Asn 52 | 2 |
| Asp 35 | 1 | Trp 33 | 1 |
| Asp 35 | 1 | Tyr 50 | 2 |
| Asp 35 | 1 | Tyr 57 | 2 |
| Ser 58 | 2 | Trp 33 | 1 |
| Ala 59 | 2 | Asn 52 | 2 |
| Ala 59 | 2 | Ser 54 | 2 |
| Ala 59 | 2 | Thr 30 | 1 |
| Ala 59 | 2 | Trp 33 | 1 |
| Asp 60 | 2 | Arg 31 | 1 |
| Asp 60 | 2 | Ser 54 | 2 |
| Asp 60 | 2 | Thr 30 | 1 |
| Ala 61 | 2 | Ser 54 | 2 |
| Ala 61 | 2 | Thr 55 | 2 |
| Asp 62 | 2 | Ser 54 | 2 |
| Lys 125 | 3 | Gly 56 | 2 |
| Lys 125 | 3 | Thr 58 | 2 |
| Lys 125 | 3 | Tyr 57 | 2 |
| Lys 127 | 3 | Tyr 57 | 2 |
Residues that participate in van der Waals interactions (4 Å distance cutoff) between L1 and 7D11-Fab are shown. Listed on the left are the atoms from L1 and their corresponding loops. On the right are the interacting atoms in the heavy chain (HC) and their corresponding complementarity-determining region (CDR) loop.