Table 1.
Strains used in phylogenetic analysis, their origin and GenBank numbers.
| Species | Strain1 | Geography | Substratum |
GenBank accession number
|
|
|---|---|---|---|---|---|
| ITS1 and 2 | tef1 | ||||
| H./T. viridescens (An)3 | G.J.S. 04-232 | Mexico | soil under Agave tequillensis | DQ841736 | DQ841716 |
| H./T. viridescens (An) | CBS 439.95 | Northern Ireland | mushroom compost | DQ315439 | AY937413 |
| H./T. viridescens | CBS 333.72 | Netherlands | unknown | DQ315441 | DQ307523 |
| H./T. viridescens (An) | CBS 438.95 | Northern Ireland | mushroom compost | DQ315438 | DQ307522 |
| H./T. viridescens | G.J.S. 99-175 | Australia (VI) | Hypoxylon sp. on Nothofagus cunninghamii | DQ315437 | DQ307521 |
| H./T. viridescens (An) | G.J.S. 97-274 = BBA 68432 | Russia | cardboard | DQ315440 | DQ307505 |
| H./T. viridescens (An) | J.B. NZ61 | New Zealand, Northland | Poukani Forest, soil under fern | DQ845419 | |
| H./T. viridescens | G.J.S. 99-142 | Australia (VI) | bark | DQ315427 | DQ307512 |
| H./T. viridescens | G.J.S. 99-128 | Australia (VI) | bark | DQ315431 | DQ307515 |
| H./T. viridescens (An) | G.J.S. 04-81 | Italy | soil | DQ841740 | DQ841709 |
| H./T. viridescens | G.J.S. 98-182 = W.J. 1223 = CBS 120067 | Austria | Carpinus | DQ315425 | DQ307511 |
| H./T. viridescens | G.J.S. 89-142 | U.S.A. (NC) | decorticated wood | DQ109532 | AY376049 |
| H./T. viridescens | G.J.S. 94-118 = IMI 374788 | France | Carpinus bark | DQ315424 | DQ307510 |
| H./T. viridescens | G.J.S. 98-129 = CBS 101928 | France | bark | AY737773 | DQ307542 |
| H./T. viridescens | CBS 119323 | Germany | Picea abies, wood | DQ677648 | DQ672607 |
| H./T. viridescens | C.P.K. 2046 | U.K. | Fagus sylvatica, wood | DQ677649 | DQ672608 |
| H./T. viridescens (An) | ATCC 32630 | Sweden | Fagus wood | DQ315445 | DQ307526 |
| H./T. viridescens (An) | G.J.S. 99-11 = N.R. 6969 | Germany | soil | DQ841743 | DQ841717 |
| H./T. viridescens (An) | C.P.K. 2138 | Germany | Picea abies, wood | DQ677647 | DQ672606 |
| H./T. viridescens (An) | Tr 6 | U.S.A. (OR) | Pseudotsuga menziesii, root infected with Phellinus weirii | DQ315444 | AY376050 |
| H./T. viridescens (An) | Tr 5 | U.S.A. (OR) | Pseudotsuga menziesii, root infected with Phellinus weirii | DQ315443 | DQ307525 |
| H./T. viridescens (An) | G.J.S. 92-11 = ICMP 16297 | New Zealand | Pinus radiata, wood | DQ315442 | DQ307524 |
| H./T. viridescens | CBS 119321 = C.P.K. 2140 T4 of H. viridescens, Epitype of T. viridescens | Austria | Fagus sylvatica, wood | DQ677651 | DQ672610 |
| H./T. viridescens (An) | G.J.S. 99-8 = N.R. 5541 | Japan | leaf litter | DQ315433 | DQ307517 |
| H./T. viridescens (An) | CBS 274.79 | Austria | wood | DQ315428 | DQ307513 |
| H./T. viridescens | C.P.K. 947 | Austria | Picea abies, wood | AY665592 | DQ672604 |
| H./T. viridescens (An) | C.P.K. 2069 | Italy (Sardinia) | soil | DQ790657 | |
| H./T. viridescens | C.P.K. 2043 | Austria | Fagus sylvatica, wood | DQ677646 | DQ672605 |
| H./T. viridescens (An) | G.J.S. 05-464 | U.K. | Fagus sylvatica, trunk endophyte | DQ841714 | |
| H./T. viridescens (An) | G.J.S. 04-202 | Switzerland | soil | DQ841729 | DQ841710 |
| H./T. viridescens (An) | G.J.S. 97-272 = BBA 66069 | Germany | soil | DQ315429 | DQ307504 |
| H./T. viridescens (An) | G.J.S. 99-10 = N.R. 5510 | Czech Republic | soil | DQ315430 | DQ307514 |
| H./T. viridescens (An) | ATCC 20898 | U.S.A. (NY) | soil | DQ315434 | DQ307518 |
| H./T. viridescens (An) | C.P.K. 2084 | Italy (Sardinia) | soil | DQ790658 | |
| H./T. viridescens (An) | J.B. PER43 | Peru (Cuzco Dept, La Raya) | soil | DQ845420 | |
| H./T. viridescens (An) | J.B. PER52 | Peru (Lima Dept, San Luís) | soil | DQ845421 | |
| H./T. viridescens | G.J.S. 05-185 | Iran | Vitis sylvestris | DQ841732 | DQ841720 |
| H./T. viridescens (An) | G.J.S. 98-86 | Mexico | decorticated wood | DQ315423 | DQ307509 |
| H./T. viridescens (An) | CBS 119322 | Great Britain | Fagus sylvatica, wood | DQ677650 | DQ672609 |
| H./T. viridescens (An) | C.P.K. 999 | Russia (Central St. For. Biosphere Reserve) | soil | AY665699 | AY665707 |
| H./T. viridescens (An) | C.P.K. 998 | Russia (Central St. For. Biosphere Reserve) | soil | AY665698 | AY665706 |
| H./T. viridescens(An) | G.J.S. 05-482 | U.K. | Fagus sylvatica, stem endophyte | DQ841728 | |
| H./T. viridescens (An) | G.J.S. 99-18 | Japan | Pinus radiata, wood | DQ315435 | DQ307519 |
| H./T. viridescens | Tr 4 | U.S.A. (OR) | Pseudotsuga menziesii, root | DQ315436 | DQ307520 |
| H./T. viridescens (An) | CBS 433.34 T of Eidamia viridescens | apple fruit | AF456922 | AF456905 | |
| Vd 3 (An) | G.J.S. 00-67 | U.S.A. (WV) | decorticated wood | DQ315418 | DQ307502 |
| Vd 3 (An) | G.J.S. 97-243 | U.S.A. (GA) | decorticated wood | DQ315419 | DQ307503 |
| Vd 3 (An) | G.J.S. 94-11 | Taiwan | bark | DQ315422 | DQ307508 |
| Vd 3 (An) | G.J.S. 94-10 | Taiwan | decorticated wood | DQ315420 | DQ307506 |
| Vd 3 (An) | G.J.S. 94-9 | Taiwan | bark | DQ315421 | DQ307507 |
| H. vinosa/T. vinosum | G.J.S. 99-158 = ICMP 16294 = CBS 119087, T of T. vinosum, epitype of H. vinosa | New Zealand | Nothofagus menziesii | AY380904 | AY376047 |
| H. vinosa/T. vinosum | G.J.S. 02-54 = ICMP 16295 = CBS 119086 | New Zealand | Nothofagus menziesii | DQ315447 | DQ307528 |
| H. vinosa/T. vinosum | G.J.S. 99-183 | Australia | bark | DQ841744 | DQ841719 |
| H. vinosa/T. vinosum | G.J.S. 99-156 = ICMP 16293 | Australia | bark | DQ315446 | DQ307527 |
| H. vinosa/T. vinosum (An) | DAOM 176335 | unknown | unknown | ||
| Hypocrea sp. | RMF 78322 | unknown | unknown | ||
| Vd 1 | G.J.S. 03-151 = CBS 120068 | Ghana | pyrenomycete | DQ841738 | DQ841711 |
| Vd 1 | G.J.S. 02-87 | Sri Lanka | bark | DQ315461 | DQ307544 |
| Vd 2 (An) | C.P.K. 1488 | Italy (Sardinia) | soil | DQ845431 | DQ845416 |
| Vd 2 (An) | C.P.K. 2071 | Italy (Sardinia) | soil | DQ845429 | |
| Vd 2 (An) | G.J.S. 05-186 | Iran | Vitis sylvestris | DQ841731 | DQ841713 |
| Vd 2 (An) | J.B. NZ151 | New Zealand (Northland, Christchurch) | clay soil | DQ845422 | |
| Vd 2 (An) | PER232 | Peru (Puno Dept, Sillustani) | soil | DQ845423 | |
| T. gamsii (An) | C.P.K. 2070 = G.J.S. 06-07 = CBS 120073 | Italy (Sardinia) | soil | DQ790645 | |
| T. gamsii (An) | C.P.K. 2093 | Italy (Sardinia) | soil | DQ790656 | |
| T. gamsii (An) | C.P.K. 2092 | Italy (Sardinia) | soil | DQ790655 | |
| T. gamsii (An) | C.P.K. 2091 = G.J.S. 06-15 | Italy (Sardinia) | soil | DQ790654 | |
| T. gamsii (An) | C.P.K. 2090 = G.J.S. 06-14 | Italy (Sardinia) | soil | DQ790653 | |
| T. gamsii (An) | C.P.K. 2077 = G.J.S. 06-11 = CBS 120077 | Italy (Sardinia) | soil | DQ790650 | |
| T. gamsii (An) | C.P.K. 2076 | Italy (Sardinia) | soil | DQ790649 | |
| T. gamsii (An) | C.P.K. 2075 = G.J.S. 06-10 = CBS 120076 | Italy (Sardinia) | soil | DQ790648 | |
| T. gamsii (An) | C.P.K. 2073 = G.J.S. 06-09 = CBS 120075 T | Italy (Sardinia) | soil | DQ790647 | |
| T. gamsii (An) | C.P.K. 2071 = G.J.S. 06-08 = CBS 120074 | Italy (Sardinia) | soil | DQ790646 | |
| T. gamsii (An) | J.B. RSA9665 | Rep. South Africa (Kwa-Zulu Natal) | soil in Eucalyptus plantation | DQ845424r | |
| T. gamsii (An) | J.B. GS33 | Guatemala (Zacapa Dept, San Lorenzo) | soil in Pine-oak forest | DQ845425 | |
| T. gamsii (An) | J.B. R414 | Ruanda (Kigali) | soil | DQ845426 | |
| T. gamsii (An) | J.B. RSA9642A | Rep. South Africa (Cape Province, Capetown) | soil under Leucodendron | DQ845427 | |
| T. gamsii (An) | J.B. RO42B | Romania (Brasov) | flower garden soil | DQ845428 | |
| T. gamsii (An) | J.B. RSA75 | Rep. South Africa (Cape Province) | soil under Protea | DQ845430 | |
| T. gamsii (An) | C.P.K.2079 = G.J.S. 06-13 | Italy (Sardinia) | soil | DQ790652 | |
| T. gamsii (An) | G.J.S. 04-09 | Texas | soil | DQ315459 | DQ307541 |
| T. gamsii (An) | G.J.S. 92-60 | Australia | Eucalyptus nitens, stem endophyte | DQ315448 | DQ307529 |
| T. gamsii (An) | G.J.S. 05-111 = CBS 120072 | Italy (Pisa) | Ricinus communis, stem | DQ841730 | DQ841722 |
| T. gamsii (An) | C.P.K. 1010 | Russia (Central St.For. Biosphere Reserve) | soil | DQ845432 | DQ845417 |
| T. gamsii (An) | C.P.K. 1011 | Russia (Central St.For. Biosphere Reserve) | soil | DQ845433 | DQ845418 |
| T. gamsii (An) | C.P.K. 2078 = G.J.S. 06-12 | Italy (Sardinia) | soil | DQ790651 | |
| T. neokoningii (An) | G.J.S. 04-216 = CBS 120070 T | Peru | Moniliophthora roreri on Theobroma cacao | DQ841734 | DQ841718 |
| H. rufa/T. viride | G.J.S. 05-104 = CBS 120071 | Italy | peat | DQ841741 | DQ841727 |
| H. rufa/T. viride (An) | CBS 101526 | Netherlands | cellulosic tissue | X93979 | AY376053 |
| H. rufa/T. viride (An) | CBS 119326 | Sweden | Pinus sylvestris, wood | AY665593 | DQ672612 |
| H. rufa/T. viride (An) | G.J.S. 99-13 = NRRL 6955 | Finland | soil | DQ841733 | DQ841712 |
| H. rufa/T. viride | C.P.K. 1995 = G.J.S. 04-371 | France | Quercus robur, wood, bark | DQ677653 | DQ672613 |
| H. rufa/T. viride (An) | C.P.K. 1007 | Russia (Central St.For. Biosphere Reserve) | soil | DQ838533 | DQ838539 |
| H. rufa/T. viride (An) | C.P.K. 1006 | Russia (Central St.For. Biosphere Reserve) | soil | DQ838532 | DQ838538 |
| H. rufa/T. viride (An) | G.J.S. 05-463 | U.K. | Fagus sylvatica, trunk endophyte | DQ841723 | |
| H. rufa/T. viride (An) | G.J.S. 97-271 = ITB 8212 = BBA 70239 | Denmark | water-damaged building | DQ315456 | AF348116 |
| H. rufa/T. viride (An) | ATCC 28020 | U.S.A. (VA) | soil | DQ109535 | AY937449 |
| H. rufa/T. viride | C.P.K. 965 | Czech Republic | Picea abies, wood | DQ677652 | DQ672611 |
| H. rufa/T. viride (An) | CBS 586.95 | Estonia | Phellinus igniarius | ||
| H. rufa/T. viride | C.P.K. 1998 | Czech Republic | Pinus sylvestris, wood | DQ677656 | DQ672616 |
| H. rufa/T. viride (An) | Tr 2 | U.S.A. (WA) | soil | DQ315457 | AY376052 |
| H. rufa/T. viride (An) | G.J.S. 99-14 = NR 6896 | U.K. | leaf litter | DQ841737 | DQ841715 |
| H. rufa/T. viride | G.J.S. 91-62 | U.S.A. (VA) | Acer sp., trunk | DQ846665 | DQ846670 |
| H. rufa/T. viride (An) | G.J.S. 92-14 = ICMP 16298 | New Zealand | Pinus radiata, wood | DQ313155 | DQ288988 |
| H. rufa/T. viride | C.P.K. 2001 | Austria | Picea abies, wood | DQ677659 | DQ672619 |
| H. rufa/T. viride | C.P.K. 1996 | U.K. | Acer pseudoplatanus, wood | DQ677654 | DQ672614 |
| H. rufa/T. viride | CBS 119327 = G.J.S. 04-369 = G.J.S. 04-370 | Austria | Picea abies, wood | DQ677657 | DQ672617 |
| H. rufa/T. viride | CBS 119325 = G.J.S. 04-372, epitype of H. rufa and T. viride | Czech Republic | Pinus sylvestris, wood | DQ677655 | DQ672615 |
| H. rufa/T. viride | C.P.K. 2000 | Austria | Pinus sylvestris, wood | DQ677658 | DQ672618 |
| H. rufa/T. viride (An) | C.P.K. 1009 | Russia (Central St.For. Biosphere Reserve) | soil | DQ838535 | DQ838541 |
| H. rufa/T. viride (An) | C.P.K. 1002 | Russia (Central St.For. Biosphere Reserve) | soil | DQ838531 | DQ838537 |
| H. rufa/T. viride (An) | C.P.K. 1001 | Russia (Central St.For. Biosphere Reserve) | soil | DQ838530 | DQ838536 |
| H. rufa/T. viride (An) | G.J.S. 99-16 | Japan? | Pinus sylvestris | DQ315460 | DQ307543 |
| H. rufa/T. viride (An) | G.J.S. 92-15 | Canada | peat | DQ315452 | DQ307537 |
| H. rufa/T. viride (An) | G.J.S. 04-86 | Italy? | peat | DQ841745 | DQ841725 |
| H. rufa/T. viride (An) | J.B. NSW13 | Australia (NSW, Wentworth Falls near Katoomba) | Eucalyptus-Banksia forest soil | DQ845430 | |
| T.viride Vb 3 (An) | Tr 21 | U.S.A. (VA) | soil | AY380909 | AY376054 |
| T.viride Vb 3 (An) | G.J.S. 90-95 = IMI 352470 | U.S.A. (NC) | wood | DQ315455 | DQ307535 |
| T.viride Vb 1 (An) | DIS 328g = IMI 394148 | Ecuador | Theobroma gileri, trunk endophyte | DQ841739 | DQ841724 |
| T.viride Vb 2 (An) | G.J.S. 04-40 | Brazil | Theobroma cacao, trunk endophyte | DQ315454 | DQ307534 |
| T. scalesiae (An) | G.J.S. 03-74 = CBS 120069 T | Galapagos Islands | Scalesia pedunculata, trunk endophyte | DQ841742 | DQ841726 |
| H. ochroleuca | C.P.K. 1895 | U.K. | bark | ||
| H. ochroleuca | G.J.S. 01-234 | Thailand | Hypoxylon sp. | DQ846666 | DQ846668 |
| T. viride Ve | G.J.S. 99-127 | Australia (VI) | wood | DQ315453 | DQ307533 |
| T. viride Ve | G.J.S. 99-204 | New Zealand | Metrosideros sp., bark | DQ315450 | DQ307531 |
| T. viride Ve | G.J.S. 99-83 | Australia (VI) | bark | AF456921 | AF348118 |
| T. viride Ve | G.J.S. 99-86 = ICMP 16290 | Australia (VI) | Eucalptus ? regnans, bark | DQ315432 | DQ307516 |
| T. viride Ve | G.J.S. 99-191 | Australia (VI) | wood | DQ315451 | DQ307532 |
| T. viride Ve | G.J.S. 04-353 | U.S.A. (TN) | Rhododendron maximum, bark | DQ323418 | DQ307551 |
| T. viride Ve (An) | G.J.S. 90-97 | U.S.A. (NC) | bark | DQ315449 | DQ307530 |
| T. viride Ve (An) | G.J.S. 90-20 | U.S.A. (WI) | decorticated wood | ||
| T. viride Ve (An) | DIS 217i | Ecuador | Theobroma gileri, trunk endophyte | DQ323420 | DQ307549 |
| H. neorufa | G.J.S. 96-141 = ATCC MYA-2680 | U.S.A. (NJ) | Acer, bark | DQ846667 | DQ846669 |
| H. neorufa | G.J.S. 96-132 | U.S.A. (NJ) | wood | AF487653 | AF487669 |
| H. neorufa | G.J.S. 96-135, T | U.S.A. (NJ) | bark | AF487655 | AF487670 |
| H. flaviconidia | G.J.S. 99-49, T | Costa Rica | bark | AY665696/AY665700 | AY665720 |
| T. paucisporum (An) | G.J.S. 03-69 = CBS 118978 = ATCC MYA-3642 | Ecuador | Theobroma cacao, rotting pod | DQ109527 | DQ109541 |
| T. paucisporum (An) | G.J.S. 01-13 = CBS 118645 = ATCC MYA-3641, T | Ecuador | Theobroma cacao, rotting pod | DQ109526 | DQ109540 |
| T. theobromicola (An) | DIS 85f, T | Peru | Theobroma cacao, stem endophyte | DQ109525 | DQ109539 |
| H. pezizoides | G.J.S. 01-257 | Thailand | wood | DQ000632 | AY937438 |
| T. hamatum (An) | DAOM 167057 = CBS 102160, neotype | Canada | spruce forest soil | Z48816 | AY750893 |
| T. pubescens (An) | DAOM 166162 | U.S.A. (NC) | forest soil | DQ083027 | AY937442 |
| T. asperellum (An) | CBS 433.97, T | U.S.A. (MD) | sclerotia of Sclerotinia minor | X93981 | AY376058 |
| T. asperellum (An) | G.J.S. 04-217 | Peru | Moniliophthora roreri on Theobroma cacao | DQ381957 | DQ381958 |
1
Abbreviations of culture collections and collectors as follows: ATCC = American Type Culture Collection, Manassas, VA, U.S.A., BBA = Biologisches Bundesanstalt, Berlin, Germany; CBS = Centraalbureau voor Schimmelcultures, Utrecht, The Netherlands; C.P.K. = Collection of C.P. Kubicek, Technische Universität, Abteilung für Mikrobielle Biochemie, Vienna; G.J.S., Tr = Culture collection of the United States Department of Agriculture, Systematic Botany and Mycology Lab, Beltsville, MD, U.S.A; DAOM = Canadian Collection of Fungal Cultures, Ottawa, Canada; DIS refers to CABI-Bioscience, Ascot, cultures held by G.J.S; ICMP = International Collection of Microorganisms from Plants, Manaaki Whenua Landcare Research, Auckland, New Zealand; IMI = CABI-Bioscience, Egham, U.K.; J.B. = John Bissett, Agriculture and Agri-Food, Eastern Cereal and Oilseed Research Centre, Ottawa, Canada; W.J. = Culture collection of Walter Jaklitsch, Technische Universität, Abteilung für Mikrobielle Biochemie, Vienna; NR = Nippon Roche Corp. Tokyo, Japan
2
From the culture collection of John Bissett, Agriculture and Agri-Food, Eastern Cereal and Oilseed Research Centre, Ottawa, Canada.
3
An = isolation made from conidia or directly from substratum, all other cultures derived from ascospores.
4
T = ex-type culture.