Table 2.
Property factors for which sequence signals are observed in TIM barrel proteins
| PDB code | cosine, k = 10 | cosine, k = 21 |
|---|---|---|
| 1TML | 6 | 2, 3, 7 |
| 1PII, domain 2 | 7 | |
| 1WSY, chain A | 7 | |
| 1NAL, chain 1 | 5, 8 | |
| 1NAR | 10 | |
| 1TPF, chain A | 2 | |
| 1LLO | 2 | 2 |
| 1PII, domain 1 | 5, 7 | |
| 1XYZ, chain A | 1, 9 | 6 |
| 2EBN | 1 | |
| 1ADS | 1 | |
| 1CEC | 9 | |
| 1FBA, chain A | 4 | |
| 1GHS, chain A | 1 | |
| 1RLC, chain L, domain 2 | 6, 7 | |
| 1EBH, chain A, domain 2 | 3* | |
| 2MNR | 4, 9 | |
| 1CHR, chain A | 10 | 10 |
| 1GOX | 4 | |
| 1ADD | 7 | |
| 2TMD, chain A, domain 1 | 4, 6 | 10 |
| 1PTA | 4 | 1, 5 |
| 1AMG, domain 1 | 8 | |
| 1XIS | 1 | |
| 1BTC | 5, 6 | |
| 1CBG | 2 |
*
β[n]21 = 1.98 in this case whereas in all other cases, β[n]21 ≥ 2.0 (see text).