Table 5.

Fluxes manually set or pruned

Abbreviationa	value	Model
EX_glc	−10	All
BIOMASS_Ec	0.46	All
EX_amdm	0.1114	All
EX_ala-L, EX_arg-L, EX_asn-L, EX_asp-L, EX_cys-L, EX_etoh, EX_for, EX_gln-L, EX_glu-L, EX_gly, EX_ile-L, EX_lac-L, EX_leu-L, EX_lys-L, EX_met-L, EX_phe-L, EX_pro-L, EX_ser-L, EX_succ, EX_thr-L, EX_tyr-L, EX_val-
L	0	All
MGSA, LGTHL, GLYOX, LDH_D2	0	reduced, basic
PGDHY, EDA	0	reduced, basic
FRD2	0	reduced, basic
ADHEr_b, ADHEr_f	0	reduced, basic
LDH_D_b, LDH_D_f	0	reduced, basic
G1PP	0	reduced, basic
METAT, ADMDC, SPMS, MTAN, MTRK, MTRI, MDRPD,
DKMPPD, DKMPD2, P5CR, UNK3	0	reduced, basic
GLCP	0	reduced, basic
ASPT	0	reduced, basic
SERD_L	0	reduced, basic
TRPAS1	0	reduced, basic
FTHFD	0	reduced, basic
NADH7, NADH9, NADH10	0	reduced, basic
PGMT_f	0	reduced, basic
VALTA_f	0	reduced, basic
ME1x	0	basic
ICL, MALS	0	basic
POX	0	basic
FBP	0	basic
PPS	0	basic
CITL	0	basic
NADH8, FRD3	0	basic
THRA_f, THRA_b	0	basic
FBA_b, GAPD_b, PGK_b, PGM_b, ENO_b, SUCOAS_f,
ICDHy_b, ACONT_b, G6PDHy_b, ASPTA1_f, PGI_b	0	basic

^aFlux abbreviations correspond to the names in (Reed et al. 2003).