Table 1.
Phyletic patterns and number of proteins *
| Domain | Firmicutes | Proteobacteria | Actinomycetes | Cyanobacteria | Spirochetes | other |
| 7TMR | Bhal (2); Cace; Ddeh; Dhaf (5) | Alpha– Atum; Bjap; Bmel; Ccre; Mmag (2); Rpal; Rrub (2); Smel. Beta– Rmet (2); Rsol. Gamma– Avin (4); Cbru; Mdeg (2); Paer (4); Pflu (2); Pput (2); Psyr (2); Sone (2); Xcam (2); Xf; Vvul Delta– Ddes. Unclassified– Msp (2) | - | - | Lint (14); Tpal. | Chut (13); Ctep. |
| 7TMR-HD | Bsub; Bant; Cace (2); Cper; Ctet; Cthe; Dhaf; Efae (2); Linn; Lmon; Oihe; Tten. | Delta– Gmet. Unclassified– Msp. | - | Ana; Npun (2); Pmar (2); Syn; Ssp; Tery | Lint; Tpal. | Cpne; Caur; Fnuc (2); Tmar. |
| 5TMR-LYT | Bsub (2); Bant (2); Cace; Ctet; Linn; Lmon; Oihe; Ooen; Saga (2); Sau (2); Sepi; Smut; Tten. | Alpha– Rsph; Rrub. Gamma– Ec (2); Styp; Sone (2); Vcho; Ypes. Delta– Ddes; Gmet. | - | - | - | Drad (2); Fnuc (2) |
| 8TMR-UT | Llac | Alpha– Bjap (2); Ccre; Mlot; Naro; Rsph; Smel (4). Beta– Bfun; Rmet (2); Rsol. Gamma– Ec (8); Mdeg (3); Pmul; Paer; Pput (2); Styp (4); Sone(2); Sfle (2) Vcho; Vpar; Xcam (2); Ypes Delta– Ddes; Mxan Unclassified– Msp. | Cglu; Tfus; Scoe. | Ana; Syn; Ssp (3). | Lint | Caur ESV |
| 7TMR-DISMED1 | Bhal (3); Cace; Ddeh; Dhaf (4) | Alpha– Ccre Beta– Rmet (2); Rsol. Gamma– Mdeg; Xcam (2). | - | - | Lint (9) | - |
| 7TMR-DISMED2 | Dhaf | Alpha– Atum; Bjap; Bmel; Mmag (2); Rpal; Rrub (2); Smel. Gamma– Avin (4); Cbru; Mdeg (2); Paer (4); Pput (2); Psyr (2); Sone (2); Xf; Vvul. Delta– Ddes. Unclassified– Msp. | - | - | Lint (4) | Chut (13) |
*Firmicutes: Bant – Bacillus anthracis; Bsub – Bacillus subtilis; Bhal – Bacillus halodurans; Cace – Clostridium acetobutylicum; Cper – Clostridium perfringens; Ctet – Clostridium tetani; Cthe – Clostridium thermocellum; Ddeh – Desulfitobacterium dehalogenans; Dhaf – Desulfitobacterium hafniense; Efae – Enterococcus faecium; Llac – Lactococcus lactis; Linn – Listeria innocua; Lmon – Listeria monocytogenes; Oihe – Oceanobacillus iheyensis; Ooen – Oenococcus oeni; Saga – Streptococcus agalactiae; Saur – Staphylococcus aureus; Sepi – Staphylococcus epidermidis; Smut – Streptococcus_mutans; Tten – Thermoanaerobacter tengcongensis. Alphaproteobacteria: Atum – Agrobacterium tumefaciens; Bjap – Bradyrhizobium japonicum; Bmel – Brucella melitensis; Ccre – Caulobacter crescentus; Mmag – Magnetospirillum magnetotacticum; Mlot – Mesorhizobium loti; Naro – Novosphingobium aromaticivorans; Rsph – Rhodobacter sphaeroides; Rpal – Rhodopseudomonas palustris; Rrub – Rhodospirillum rubrum; Smel – Sinorhizobium meliloti. Betaproteobacteria: Bfun – Burkholderia fungorum;Rmet – Ralstonia metallidurans; Rsol – Ralstonia solanacearum. Gammaproteobacteria: Avin – Azotobacter vinelandii; Cbru – Coxiella brunettii; Ec – Escherichia coli; Mdeg – Microbulbifer degradans; Pmul – Pasteurella multocida; Paer – Pseudomonas aeruginosa; Pflu – Pseudomonas fluorescens; Pput – Pseudomonas putida; Psyr – Pseudomonas syringae; Styp – Salmonella typhimurium; Sone – Shewanella oneidensis; Sfle – Shigella flexneri; Vcho – Vibrio cholerae; Vpar – Vibrio parahaemolyticus; Vvul – Vibrio vulnificus; Xcam – Xanthomonas campestris; Xf – Xylella fastidiosa; Ypes – Yersinia pestis. DeltaProteobacteria: Ddes – Desulfovibrio desulfuricans; Gmet – Geobacter metallireducens; Mxan – Myxococcus xanthus. Unclassified Proteobacteria: Msp – Magnetococcus sp. Cyanobacteria: Ana – Anabaena sp.; Npun – Nostoc punctiforme; Pmar – Prochlorococcus marinus; Syn – Synechococcus sp.; Ssp – Synechocystis sp.; Tery – Trichodesmium erythraeum. Spirochetes: Lint – Leptospira interrogans; Tpal – Treponema pallidum. Actinobacteria: Cglu – Corynebacterium glutamicum; Tfus – Thermobifida fusca; Scoe – Streptomyces coelicolor. Other:Cpne – Chlamydophila pneumoniae; Ctep – Chlorobium tepidum; Caur – Chloroflexus aurantiacus; Chut – Cytophaga hutchinsonii; Drad – Deinococcus radiodurans; ESV – Ectocarpus siliculosus virus; Fnuc – Fusobacterium nucleatum; Tmar – Thermotoga maritima. The number of proteins (if more than one) is given in parenthesis. Incomplete genomes are underlined.