Table I. NMR structure determination statistics.
Restraint statistics |
Tandem Vps27 UIM |
Vps27 UIM-1–ubiquitin complex |
Distance restraints | 858 | 2138 |
Unambiguous NOE distance restraints | 412 | 1625 |
Intraresidue | 256 | 846 |
Sequential (|i – j| = 1) | 124 | 295 |
Medium range (1 < |i – j| ≤ 4) | 32 | 231 |
Intramolecular long range (|i – j| > 4) | 0 | 177 |
Intermolecular | 76 | |
Hydrogen-bonding distance restraints | 50 | 76 |
Ambiguous NOE distance restraints | 396 | 437 |
Torsion angle restraints |
66 (33 φ, 33 ψ) |
112 (51 φ, 51 ψ, 10 χ1) |
Structure quality of NMR ensemble |
|
|
Restraint satisfaction | ||
RMS differences for distance restraints (Å) | 0.007 ± 0.000 | 0.011 ± 0.000 |
RMS differences for torsion angle restraints (°) | 0.012 ± 0.007 | 0.098 ± 0.012 |
Deviations from ideal covalent geometry | ||
Bond lengths (Å) | 0.001 ± 0.000 | 0.001 ± 0.000 |
Bond angles (°) | 0.305 ± 0.003 | 0.327 ± 0.002 |
Impropers (°) | 0.149 ± 0.003 | 0.214 ± 0.004 |
Ramachandran plot statistics | ||
Residues in most favored regions (%) | 65.4 | 87.3 |
Residues in allowed regions (%) | 29.4 | 11.8 |
Residues in disallowed regions (%) |
5.1 |
0.9 |
Average atomic RMSDs from the average structure |
|
|
All atoms (Å) | 11.4 | 1.90 |
All atoms except disordered regionsa (Å) | 10.0 | 1.32 |
Backbone atoms (N, Cα, C′) | ||
All residues (Å) | 10.8 | 1.31 |
All residues excluding disordered regionsa (Å) | 9.1 | 0.57 |
Secondary structural elements (Å) | 0.27 and 0.36b | 0.53 |
aDisordered regions in the tandem Vps27 UIM include residues 249–258, 273–303 and 324–329, while those in the Vps27 UIM-1–ubiquitin complex include residues 256–257 and 274–278 of Vps27 and 73–76 of ubiquitin.
bReported values are for the αA and αB helices corresponding to residues 259–272 and 304–323, respectively.